Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00744 ATGGCTAATAGTTTGGAAGGAACTGGTGAGTCTGGTAGCCAGTCAGATGAGAGTTATCATTTTGAGAGGATGCACATTGAGCCTATCTACGATGCTTTTGTGTGCCCGTTAACAAAGCAAGTCATGCTTGATCCAGTTACCTTGGAAAATGGTCAAACCTTTGAACGTGAAGCTATTGAGAAGTGGTTCAAGGAATGCAAGGAGAGTGGACGCAAGTTAGTTTGTCCGTTGACGCTGAAAGAACTGAGAAGTACAGAAGTGAATCCCAGTATAGCTTTGCGAAACACCATAGAAGAGTGGACTGCAAGGAATGAAGCTGCTCAACTCGATATGGCTTGTAGGTCCCTAAATATGGCAGCCCCAGAAAGTGAAATTTTGCAGGCTCTGAAATATGTCCAATACATCTGGCAAAGGCCTCGGGCAAATAAGCATATTGTACGTAATGCAGGACTGATGCCTATGATAATTGACATGCTAAAAAGTAGCAGCCGCAAAGTTCGTTGTAGAGCTTTGGAAACCCTCAGAATTGTAGTAGAGAGTGATGAAGAAAATAAGGCTCTACTGGCAGAGGGGGATACGGTGCGCACAATTGTAAAGTTCCTGTCTCATGAACTTTCACGAGAAAGAGAGGAAGCTGTCTCTTTACTTTATGAGCTTTCAACATCTGAACTATTGTGTGAGAAAATTGGTTCCATTAACGGTGCAATTTTGATATTGGTTGGAATGACAAGCAGCACATCAGAAGATCTCTCGACAGTGGTGAAGGCAGATAAAACCTTGGATAATTTAGAAAAGTGCGAGAACAATGTGCTTCAGATGGCTGAAAATGGCAGACTGCAGCCTTTACTGACACGGCTCCTTGAAGGCTCTCCAGAAACCAAAGTGTCTATGGCTGGGTACCTCGGTGAGCTTGTTTTTAACAATGACGTTGAAGTTCTTGTAGCAAGAACTGTTGGTTCATCTCTGATTGATATTATGCAAAGTGGAAACATGCAATCAAGAGAAGCCGCTTTAAAGGCTCTAAATCAGATATCATCTTCTGAGCGAAGCGCTAAAATTTTGATAGAGGCTGGAATACTTCCTCCTCTTGTGAAAGATCTTTTCATTGTAGGTGCCAATCAGCTTCCTATGAGATTGAAAGAGGTGTCTGCAACAATTCTTGCCAATCTTGTCAGCTCAGGATATGACTTTGATTCCATTCCTGTAGGATCTAATCATCAGACTTTGGTTTCCGAAGAAATTGTTCATAACTTGCTACACCTCATCAGCAACACTGGTCCAGCAATTGAGTGTAAACTTTTACAGGTTCTTGTTGGACTAACTAGTTCTCCAACTACAGTATTTAGTCTTGTTTCGGCCATTAAAAGTTCTGGTGCCATTATCAGTTTAGTCCAATTTGTTGAGGCCCCACAGAAAGATTTGCGTGTAGTATCCTTAAAACTTCTTCAGAATCTTTCTCCACACATGTGTGAGGAATTGGCTGACGCCTTACGTGGGTCTATTGGACAGCTAGGTACACTTGTAAGAATTATATCAGAAAACATTGGAATCAATGAAGAGCAGGCAGCAGCTGTTGGTCTACTGGCTGATTTACCAGAAAGGGATTTAGGCCTTACCAGGCAGATGCTAGATGAAGGTGCTTTTCAACTGGTTGTCTCTAGAGTGATTAGCATCCGAAAGGGTGCAACTAGAGGGAGCCGTTTTATGACACCATTTCTAGAAGGGCTTGTAAGGATTATGGCTAGAGTCACTTTTGTCTTGGATGATGAGCCTGCCGCTCTTGCACTTTGCCGCGAGTATAACTTTGCTGCTGTATTCATTGAGATGCTTCAGGCCAATGGGCTTGACAATGTACAGATGGTTTCTGCAATGGCATTGGAGAACTTATCACAAGAATCCAAGAATTTGACGAAGTTGCCAGAGTTGCCGACACCAGGGTTTTGTTCTTCAATTTTTCCATGTTTCAGCAAGCAGCCTGTTATAACAGGACTCTGCAGGATCCACCGAGGAACATGTTCACTAAAGGATACATTTTGTCTTTTGGAAGGACGAGCCATTGGAAAACTGATAGCTCTTTTGGATCACACAAATGAGAAAGTGGTTGAGGCAGCACTTGCTGCATTATCTACGTTGTTAGAAGATGGGGTTGACATAGAACAAGGGGTGATGATTCTGTATGAAGCTGATGGTGTGAAGCCTATAATTGATGTGTTACTTGAGAAACGCACAGAGAATTTGATGAGGAGAGCAGTATGGACAGTTGAGAGATTATTGCGAAGTGAGGACATAGCATACGATGTTTCTGGAAATCGAAATGTGAGTACTGCACTTGTTGATGCCTTCCAGAATGGTGACTATAGGACTAGGCAAATTGCTGAACGAGCTCTGAAGCATGTTGATAAGATACCCAACTTCTCAGGGATCTTTCCCAATATGGCATAA 2442 0.4255 MANSLEGTGESGSQSDESYHFERMHIEPIYDAFVCPLTKQVMLDPVTLENGQTFEREAIEKWFKECKESGRKLVCPLTLKELRSTEVNPSIALRNTIEEWTARNEAAQLDMACRSLNMAAPESEILQALKYVQYIWQRPRANKHIVRNAGLMPMIIDMLKSSSRKVRCRALETLRIVVESDEENKALLAEGDTVRTIVKFLSHELSREREEAVSLLYELSTSELLCEKIGSINGAILILVGMTSSTSEDLSTVVKADKTLDNLEKCENNVLQMAENGRLQPLLTRLLEGSPETKVSMAGYLGELVFNNDVEVLVARTVGSSLIDIMQSGNMQSREAALKALNQISSSERSAKILIEAGILPPLVKDLFIVGANQLPMRLKEVSATILANLVSSGYDFDSIPVGSNHQTLVSEEIVHNLLHLISNTGPAIECKLLQVLVGLTSSPTTVFSLVSAIKSSGAIISLVQFVEAPQKDLRVVSLKLLQNLSPHMCEELADALRGSIGQLGTLVRIISENIGINEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVVSRVISIRKGATRGSRFMTPFLEGLVRIMARVTFVLDDEPAALALCREYNFAAVFIEMLQANGLDNVQMVSAMALENLSQESKNLTKLPELPTPGFCSSIFPCFSKQPVITGLCRIHRGTCSLKDTFCLLEGRAIGKLIALLDHTNEKVVEAALAALSTLLEDGVDIEQGVMILYEADGVKPIIDVLLEKRTENLMRRAVWTVERLLRSEDIAYDVSGNRNVSTALVDAFQNGDYRTRQIAERALKHVDKIPNFSGIFPNMA* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00744 813 SUPERFAMILY RING/U-box 22 110 - -
Pte11g00744 813 CDD RING-Ubox_PUB 30 87 IPR045210 -
Pte11g00744 813 Gene3D - 573 803 IPR011989 -
Pte11g00744 813 Gene3D - 310 487 IPR011989 -
Pte11g00744 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 809 - -
Pte11g00744 813 Coils Coil 256 276 - -
Pte11g00744 813 SMART arm_5 266 306 IPR000225 GO:0005515
Pte11g00744 813 SMART arm_5 717 759 IPR000225 GO:0005515
Pte11g00744 813 SMART arm_5 346 392 IPR000225 GO:0005515
Pte11g00744 813 SMART arm_5 139 179 IPR000225 GO:0005515
Pte11g00744 813 SMART arm_5 181 221 IPR000225 GO:0005515
Pte11g00744 813 SMART arm_5 672 713 IPR000225 GO:0005515
Pte11g00744 813 SMART arm_5 588 631 IPR000225 GO:0005515
Pte11g00744 813 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Pte11g00744 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 104 IPR013083 -
Pte11g00744 813 SUPERFAMILY ARM repeat 455 801 IPR016024 -
Pte11g00744 813 Gene3D - 105 309 IPR011989 -
Pte11g00744 813 SUPERFAMILY ARM repeat 122 444 IPR016024 -
Pte11g00744 813 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Pte11g00744 813 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00744 Pte-Chr11 8543168 8546621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00744 5 814 U-box Gene Family AT1G76390 65.437 0.0 1033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00744 - - qsa:O6P43_018783 1337.01