Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00723 ATGGCAGCTGCATCTTCATCAGCAACAGCTATGTTTGGTATCAGAGAGGAACAACAAAATCAGACCAACAACCAACATTCCTCTGCACCTTCTTCTTCCACAACTCCGGCAACACCACTTACTCAGAAGAAGAAACGAAACCAGCCCGGCAACCCCAATCCTGATGCGGAAATCATCGCACTTTCTCCAAAGACTTTAATGGCCACAAATAGATTTATCTGCGAGGTTTGCAACAAGGGCTTTCAACGTGAGCAAAATCTTCAGCTCCATCGAAGAGGACATAACCTTCCCTGGAAGCTCAAGCAAAAAACAACAAAAGAGCCCAAGAGGAAGGTCTACCTTTGTCCAGAACCTACTTGTGTCCACCATGACCCATCAAGGGCTCTGGGGGACTTGACTGGAATCAAAAAGCACTATTCTCGCAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCGCCAAGAAGTATGCAGTTCAGTCAGATTGGAAGGCTCACGCAAAAACTTGCGGAACAAGGGAATATCGATGTGATTGTGGTACTCTCTTCTCAAGGAGAGACAGCTTCATCACCCATAGGGCCTTTTGCGATGCATTGGCTCAGGAGACTGCTAGACAACCCCCCAATCTCAACAACGCCATGGGTAGCCATTTGTTTGGAGTTAGCAACGTGGGGTTAGGCTTATCTCAGGTGGGGCAGCCTCAGATCAGTTCAATCCAAGATCAGAACAACAACCGCAACCAGGGTGGTGATATCTTGAGGCTTGGTGGTGCTGCTCGCTCTTCGCAGTTTGATAATCTTCTTCATCAATCCACTGCTGGTTCATCTTTCCGCGGTTCTCAGCAGAATATGCCTGCTTCTGCTTTTTTCATTCATGAACCAAACCAACAAAGCTATCATGATCATCATCCTCATCAATCTCAACAAGGGATTATGCAAAGCAAGCAATTCCAAGGACTGGTCCAAATGTCTGATATCCATAACAGTACAAACAATTCTGCAACTGGTGCAAATCTGTTTAGCCTTCCGTTTCTCTCGAATACCAATGGTAACAGCAACAATAGCAACTTGCCATCTCCGGTTATGCTCGTTCCTGATCATCATTTCAGTTCTGTAAACGGCAATGCTTCTGGTGATGCCGGGAACAATGAAGGCAATAGCTTCTTCACCAGTGGTAATGTTATCGGTGACCAAAGCTCTAGTGTGCCATCTCTTTACAGTGCTGCTACTGCTGCTCCTCCTACAGCCGTGTCTCACATGTCGGCCACTGCGCTCCTGCAGAAAGCTGCTCAGTTGGGCTCATCCTCAAGCAACAGCACAACCGCCTCACTGCTGAGAAGCTTTGGAAGCCCTTCATCGTCGTCAAAAGCTGACAATAGAAACCTTGTTAGCCCCGGAAACTATGGCGCCATGTTTGGCGGGAACGAGAACAACTTCCAGGACTTGGTCAACTCTTTTGCCAATGCAGGTAGCTCTTCAATTCTGGAAAAAGCAGCAGCTGGTTTGAATGCTTATGAAGGCTACGACAGTACTGGTAGAGCCAATTTGAGACATGCAGTTAGCATCGGAGGGTCTGATCAGCTCACCAGAGACTTCTTAGGTGTAGGACAGATTGTAAGGAGCATGAGTGGAGGTGGGGTTTCACATATAGACCAGCGGCAGCAGCCACAACAGCAACGTGGGATGACCATGAATTCCTTGGATTCTGAGAGAAATGCTGCGCCGTCAGCCCAAACTTTTGGAGGAGGAAACTTTCACTGA 1761 0.4759 MAAASSSATAMFGIREEQQNQTNNQHSSAPSSSTTPATPLTQKKKRNQPGNPNPDAEIIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCAKKYAVQSDWKAHAKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQETARQPPNLNNAMGSHLFGVSNVGLGLSQVGQPQISSIQDQNNNRNQGGDILRLGGAARSSQFDNLLHQSTAGSSFRGSQQNMPASAFFIHEPNQQSYHDHHPHQSQQGIMQSKQFQGLVQMSDIHNSTNNSATGANLFSLPFLSNTNGNSNNSNLPSPVMLVPDHHFSSVNGNASGDAGNNEGNSFFTSGNVIGDQSSSVPSLYSAATAAPPTAVSHMSATALLQKAAQLGSSSSNSTTASLLRSFGSPSSSSKADNRNLVSPGNYGAMFGGNENNFQDLVNSFANAGSSSILEKAAAGLNAYEGYDSTGRANLRHAVSIGGSDQLTRDFLGVGQIVRSMSGGGVSHIDQRQQPQQQRGMTMNSLDSERNAAPSAQTFGGGNFH* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00723 586 MobiDBLite consensus disorder prediction 440 461 - -
Pte11g00723 586 Gene3D Classic Zinc Finger 126 205 - -
Pte11g00723 586 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Pte11g00723 586 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Pte11g00723 586 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Pte11g00723 586 MobiDBLite consensus disorder prediction 547 586 - -
Pte11g00723 586 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Pte11g00723 586 MobiDBLite consensus disorder prediction 544 586 - -
Pte11g00723 586 MobiDBLite consensus disorder prediction 11 49 - -
Pte11g00723 586 Gene3D Classic Zinc Finger 53 120 - -
Pte11g00723 586 SMART c2h2final6 148 168 IPR013087 -
Pte11g00723 586 SMART c2h2final6 72 94 IPR013087 -
Pte11g00723 586 SMART c2h2final6 113 143 IPR013087 -
Pte11g00723 586 FunFam protein indeterminate-domain 12-like 51 119 - -
Pte11g00723 586 MobiDBLite consensus disorder prediction 1 57 - -
Pte11g00723 586 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Pte11g00723 586 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 553 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00723 Pte-Chr11 8243451 8248864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00723 42 546 IDZ Gene Family AT2G02070 48.812 2.48e-140 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g00723 zf-C2H2_jaz 3.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00723 K25870 - jre:109006348 670.618