Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00674 ATGGGAAAGAAGAAGAAGAGAGTTTCATCGAAAGTGTGGTGCTACTACTGCGATCGAGAATTCGATGACGAGAAGATATTGGTTCAGCATCAGAAGGCTAAGCATTTCAAGTGCCACGTTTGCCACAAGAAACTATCGACTGCTGGTGGCATGACGATTCATATTTTGCAAGTTCACAAAGAATCCGTCACCAAGGTACCAAATGCAAAACCTGGCAGAGAATCCACTGATATCGAGATATATGGAATGCAAGGAATTCCACCTGATATCTTGGCTGCACATTATGGCGAGGAAGAGGAAGAGTTGCCATCAAAAGCAGCTAAAGTAGACATCCGATCAACCCATTATATAGGTGGAGGTGTAACAGGAACTCTCGGTGTTGGATATCCTCCTAATTCTAATATGGGAGTATTTCGACCCACATATAGTGCACCTTTACCACTGGCTCCAACCACTTGGCCAATCCCACCCGGACACCACCCATGGTATCCACAGCAACATGTAGTTCCTGTCCCTCCTGCTGCTACACCATTTGTGCCACAACCGTTATTTCCAGTCCACAATGCAATACATCCATCTACGACCGTGACTCCTGCTACACAAATGGCTCCTCCTGGGTTGCCTTCATCTACTCTTTCTGTTCAAGGATCTCAACCTTTGTTTCCCGTTGTTGGAACAAACAACACAGCTAGTCAAAGCTCTCCATTTTCTACTCCTCCATTGTCCACAGGTGCTTCATCCATAGCTCCATCAGAAGTTAAGAGCTCAGTTCCTGTCGCCAACACTTCAGTAATGGGTAGTTATCAAACCCCAGTGATTCCAGGAAGTACATTGAGTGACTCACATTCTTATGCTTCTGGACCTAACACTGGTGGTCCTCCAATAGGACCTCCACCTGTTATTGCTAACAAGGCACCTGCTACCCACCCAGCCATCAACGAAGTATATCTAGTTTGGGATGATGAGGCAATGTCTATGGAGGAGAGGAGAATGTCTTTACCAAAATATCAGGTTCATGATGAAAGTAGCCAGGTAAGTCATACTACCTTTTAA 1053 0.453 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMTIHILQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEEELPSKAAKVDIRSTHYIGGGVTGTLGVGYPPNSNMGVFRPTYSAPLPLAPTTWPIPPGHHPWYPQQHVVPVPPAATPFVPQPLFPVHNAIHPSTTVTPATQMAPPGLPSSTLSVQGSQPLFPVVGTNNTASQSSPFSTPPLSTGASSIAPSEVKSSVPVANTSVMGSYQTPVIPGSTLSDSHSYASGPNTGGPPIGPPPVIANKAPATHPAINEVYLVWDDEAMSMEERRMSLPKYQVHDESSQVSHTTF* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00674 350 Gene3D Classic Zinc Finger 1 66 - -
Pte11g00674 350 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Pte11g00674 350 MobiDBLite consensus disorder prediction 225 252 - -
Pte11g00674 350 PANTHER ZINC FINGER PROTEIN 207 1 343 - -
Pte11g00674 350 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Pte11g00674 350 SMART c2h2final6 12 35 IPR013087 -
Pte11g00674 350 SMART c2h2final6 36 59 IPR013087 -
Pte11g00674 350 MobiDBLite consensus disorder prediction 273 288 - -
Pte11g00674 350 CDD SUF4-like 13 92 - -
Pte11g00674 350 MobiDBLite consensus disorder prediction 273 299 - -
Pte11g00674 350 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00674 Pte-Chr11 7272828 7277511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00674 1 346 C2H2 Transcription Factor Family AT1G30970 58.378 3.08e-128 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g00674 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00674 - - cave:132171795 462.225