LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte11g00669	ATGGCATCAAAGTCTTACTCAAATCTACTTGAGCTTGCCTCTGGTGACAGTCCTACTTCTGGAAGAGTCCAAAGGAGATTCCCAAGGATTATGACTGTAGCTGGGTTGATATCAGATATTGATGATGACCCAGCTGAGAGTGTACTCTCTGATCCATCTTCTTCTTCAGCCCAGCGTGATCGAATCATTATAGTTGCTAATCAGCTTCCCCTAAAGGCTCAGAGGAAATCTGATGGTAGTAATGGTTGGATATTTAGTTGGGATGAGAATTCACTTCAGCTTCAACTGAGAGATGGATTAGGTGATGACGATATGGAGATTATTTATGTCGGCTGTCTGAAAGAAGAAATTCATCCTAATGAACAAGATGAGGTTTCACAGATTCTGCTTGATTCATTTAGATGTGTCCCAACTTTTCTACCACAAGATCTATTCACCAAGTACTATCATGGTTTTTGCAAGCAGCAGTTATGGCCACTGTTCCATTATATGTTGCCTTTGTCACCGGAACTTGGTGGTAGGTTCAATAGGTCATTGTGGCAAGCATATGTATCTGTGAATAAAATTTTTGCTGACAGAATTATGGAAGTGATTAACCCAGAAGATGATTTTGTGTGGATACATGATTATCATCTAATGGTCTTACCAACTTTCTTGAGGAAAAGATTCAATAGAGTCAAGCTTGGGTTTTTCCTTCACAGTCCGTTTCCCTCATCAGAAATCTACAAGACATTGCCCATACGTGAAGAACTATTGAGGGCACTGCTGAATTCTGATTTGATTGGATTCCATACTTTTGATTATGCCCGGCATTTTCTCTCCTGTTGTGGTCGGATGCTCGGTCTTACTTATGAATCCAAGCGGGGTTACATCGGTCTTGAGTATTATGGTAGAACTGTCAGTATCAAAATTCTTCCTGTTGGTATACACATGGGGCAACTGCAATCAGCTCTCAGCCTATCAGAGACTGAAGAAAAAGTTGCGCAGCTTATAAGGCATTTTTCAGACCAAGGTAGAATAATGTTGCTTGGTGTAGATGACATGGATATCTTCAAGGGCATAAGCTTGAAGCTATTAGCCATGGAGCAACTTCTTATTCAGCACCCTGAGTGGCAAGGAAAGGTTGTATTAGTCCAGATTGCGAACCCCGCTAGAGGGCGTGGTAAAGATGTGAAGGAAGTACAAGCTGAGACGAGATCAACTGTGAAGAGGATCAATGAGAACTTTGGTAAACCTGGGTATAAACCTGTTATCTTGATTGAAGAGCCACTCAAGTTTTATGAGAGAATTGCTTACTATGTTGTCGCTGATTGCTGTTTAGTCACTGCTGTCAGAGATGGAATGAATCTTATACCTTATGAGTATATAATCAGTCGCCAAGGTAACGATAAATTGGATGAGCTGTTGCGGTTGAAGCCCTCTACTCCCAAGAAGAGCATGTTGGTTGTTTCTGAATTCATTGGCTGCTCTCCATCTTTAAGTGGAGCAATTCGAGTGAACCCTTGGAATATCGATGCAGTGGCAGATGCAATGGACAATGCCTTGCAAATGGCTGATCCAGAAAAACAGCTCCGCCATGAGAAGCATTACAGATATGTCAGCACTCATGATGTTGGTTATTGGGCTCGAAGTTTCTTACAAGACTTGGAAAGGACATGTCGCGATCATTCGAGGAGAAGGAGCTGGGGGATTGGCTTTGGCCTTAGTTTCAGAGTTGTGGCACTAGATCCAAATTTCAGGAAGCTTGTAATGGAACACATAGTTTCAGCTTACAAAAGGACTAGAAGTAGGGCAATTCTTTTAGACTATGATGGCACGCTGATGCCTCAAAATTCCATTGATAAAAGTCCAACCCCCAAAACCATAGAAGTTCTTAATACATTAGGTAGAGATAAGAACAATACTGTCTTCCTTGTTAGTGCTAGAAGTCGCAAAACTCTCTCTGAATGGTTTTCTACTTGTGAGAACATGGGAATGGCTGCTGAGCATGGTTATTTTCTGAGAACGAAGCAGGATGCTGAATGGGAAACATGTGGACCTGTGATAGATTCTAGTTGGAAACAGATTGCTGAGCCTGTCATGAAGCTTTACACAGAAACAACTGACGGGTCTACTGTTGAAGACAAAGAAACTTCACTTGCATGGTGTTATGAGGATGCGGATCCAGACTTTGGATCTTGCCAAGCTAAGGAACTTCTGGATCATCTGGAAAGTGTGCTTGCTAATGAGCCAGTTACTGTTAAAAGTGGGCAGAATGTGGTGGAAGTTAAACCACAGGTAAGCGCCCTACATCTCTAG	2298	0.4204	MASKSYSNLLELASGDSPTSGRVQRRFPRIMTVAGLISDIDDDPAESVLSDPSSSSAQRDRIIIVANQLPLKAQRKSDGSNGWIFSWDENSLQLQLRDGLGDDDMEIIYVGCLKEEIHPNEQDEVSQILLDSFRCVPTFLPQDLFTKYYHGFCKQQLWPLFHYMLPLSPELGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCGRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSALSLSETEEKVAQLIRHFSDQGRIMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETRSTVKRINENFGKPGYKPVILIEEPLKFYERIAYYVVADCCLVTAVRDGMNLIPYEYIISRQGNDKLDELLRLKPSTPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDNALQMADPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCRDHSRRRSWGIGFGLSFRVVALDPNFRKLVMEHIVSAYKRTRSRAILLDYDGTLMPQNSIDKSPTPKTIEVLNTLGRDKNNTVFLVSARSRKTLSEWFSTCENMGMAAEHGYFLRTKQDAEWETCGPVIDSSWKQIAEPVMKLYTETTDGSTVEDKETSLAWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNVVEVKPQVSALHL*	766

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte11g00669	765	FunFam	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6	596	713	-	-
	Pte11g00669	765	FunFam	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6	54	315	-	-
	Pte11g00669	765	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	29	761	IPR001830	GO:0003824\|GO:0005992
	Pte11g00669	765	FunFam	Alpha,alpha-trehalose-phosphate synthase	317	534	-	-
	Pte11g00669	765	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	60	553	-	-
	Pte11g00669	765	Pfam	Trehalose-phosphatase	600	760	IPR003337	GO:0003824\|GO:0005992
	Pte11g00669	765	Pfam	Glycosyltransferase family 20	61	550	IPR001830	GO:0003824\|GO:0005992
	Pte11g00669	765	Gene3D	Glycogen Phosphorylase B;	53	316	-	-
	Pte11g00669	765	NCBIfam	HAD-IIB family hydrolase	599	737	IPR006379	-
	Pte11g00669	765	FunFam	Trehalose-6-phosphate synthase 2	680	759	-	-
	Pte11g00669	765	CDD	GT20_TPS	61	550	IPR001830	GO:0003824\|GO:0005992
	Pte11g00669	765	Gene3D	-	679	759	-	-
	Pte11g00669	765	SUPERFAMILY	HAD-like	597	759	IPR036412	-
	Pte11g00669	765	Gene3D	-	599	678	IPR023214	-
	Pte11g00669	765	Gene3D	Glycogen Phosphorylase B;	317	534	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte11g00669	Pte-Chr11	7226769	7231229	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte11g00669	1	759	Trehalose Biosynthesis Gene Families	AT1G68020	79.922	0.0	1303

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte11g00669	K16055		-	cave:132176996	1382.08