Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00644 ATGGATGACATGAAAGACAAAGTCAAAGGTTTCATGAAGCGAGTCAACAGCCAACTGCCTTCATCTTCATCTGGTAAGTTTAAAGGCCAAGGTAGAGTCTTAGGTTCATCTTCTTCAGCACCCAGTAATCCAATTCCTTCAAGATCTGCGCAGAATTTCAATTCCAAGCCGAATTCAGTTTCTACCTCAACAAGTTCAAAGCCTGCACCCCGAAAACCTTCGCCCGTAAATTCTAATCAGAACACGGTTGATCGGTCAGCAGAAACTACTAAATCGATCTCGAAACAGAATCCCAGTAATGGGTTTGATCCGTTTGACTCACTGGTCACAAATGGGAATAGAACACAGCATGGATATTCGTTGAATGTTTTTGAATGCCCAATATGTGGGAAACCCTTTGGGTCTGAAGAAGAGGTGTCCATACATGTAGATAGTTGTTTGAACAATAGCAATTCAGCTGAGCCCGTTGGTGGGGAGGGTAGTTCAGAAAGAAATGATCAACCGGTTGAGCCTAATGGTGAAGTAGAGGTTTATGTTGGTACCTATCTTTCCGGGAAACCATCGGATGGATCGATCGAGGTTGTTCTTAAATTGTTTAAGAACATTATAAGGGAACCAGAGAATGCAAAGTTTAGGAGGATACGATTGTGTAATCCAAAGATTAAGGAATCTGTTATTGATGTTACGGGAGGTATGGAATTGCTGGAGTTTGTAGGATTTGAATTAAGCGAGGAGAATGGAGAGACTTGGGCTTTAATGAAGGTGCCTAGCGAAGATGGAATTAGTTTGATCACTAAGGTCGTAACTTTGCTAGAACAGCTGAAGGTACAGGAACCTGAAAAAAGAGAAAATATGACATCTATATCTACTTTCGAGGTAGATGTCCAACCAGAGCCGAAGAAGGTAGACCGGCAGGTGAAGGTCTTCTTTTCTGTACCTGAAAGTGTAGCAGCCAAAATAGAGCTACCAGACTCTTTCTATAAGCTTTCCATTGAAGAAGTGAGAAGAGAAGCTGAGTTGAGGAGAAAAAAGATTGCCGATTCACAGCTTTTGATTCCCAAGTCCTATAAAGAAAAGCAGACAAAAGCTACGAGAAAGAAATACACAAGATGTTTGATCAGAGTTCAATTTCCAGATGGAGTGGTGCTTCAAGGTGTTTTTGCACCGTGGGAGTTCACAACTGCTCTATATGAGTTTGTCAGTTCCGCATTGAAAGAACCCAGTTTAGAGTTTGAGCTGTTGGATCCTGTGCTTGTCCGAAGGCGGGTGATCCCTCGATTCCCTGCTGCAGGAGCCCAAGCCAGAACATTATATGAAGAGGACTTGGTGCCTTCTGCTCTCATTAAGTTCAAACCCATCGAAACAGATTCAGTTGTTTTTACAGGTCTTAGGAATGATTTGCTTGAAATCATCGAACCGCTTGTTCAAAATTAG 1434 0.4219 MDDMKDKVKGFMKRVNSQLPSSSSGKFKGQGRVLGSSSSAPSNPIPSRSAQNFNSKPNSVSTSTSSKPAPRKPSPVNSNQNTVDRSAETTKSISKQNPSNGFDPFDSLVTNGNRTQHGYSLNVFECPICGKPFGSEEEVSIHVDSCLNNSNSAEPVGGEGSSERNDQPVEPNGEVEVYVGTYLSGKPSDGSIEVVLKLFKNIIREPENAKFRRIRLCNPKIKESVIDVTGGMELLEFVGFELSEENGETWALMKVPSEDGISLITKVVTLLEQLKVQEPEKRENMTSISTFEVDVQPEPKKVDRQVKVFFSVPESVAAKIELPDSFYKLSIEEVRREAELRRKKIADSQLLIPKSYKEKQTKATRKKYTRCLIRVQFPDGVVLQGVFAPWEFTTALYEFVSSALKEPSLEFELLDPVLVRRRVIPRFPAAGAQARTLYEEDLVPSALIKFKPIETDSVVFTGLRNDLLEIIEPLVQN* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00644 477 Gene3D Classic Zinc Finger 120 151 - -
Pte11g00644 477 SUPERFAMILY PUG domain-like 189 254 IPR036339 -
Pte11g00644 477 MobiDBLite consensus disorder prediction 15 109 - -
Pte11g00644 477 Gene3D - 360 453 - -
Pte11g00644 477 CDD UBX_UBXN6 371 451 - -
Pte11g00644 477 CDD PUB 184 273 - -
Pte11g00644 477 FunFam UBX domain-containing protein 6 360 451 - -
Pte11g00644 477 ProSiteProfiles UBX domain profile. 366 450 IPR001012 GO:0005515
Pte11g00644 477 SMART PGNneu 190 257 - -
Pte11g00644 477 MobiDBLite consensus disorder prediction 152 171 - -
Pte11g00644 477 SMART c2hc_5 123 147 IPR006642 GO:0003677|GO:0006281
Pte11g00644 477 SUPERFAMILY Ubiquitin-like 338 450 IPR029071 -
Pte11g00644 477 Pfam UBX domain 366 421 IPR001012 GO:0005515
Pte11g00644 477 MobiDBLite consensus disorder prediction 1 109 - -
Pte11g00644 477 Gene3D - 185 273 - -
Pte11g00644 477 Pfam PUB domain 190 262 IPR018997 -
Pte11g00644 477 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 476 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00644 1 398 C2H2 Transcription Factor Family AT2G01650 55.990 7.53e-144 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g00644 UBX 0.00012 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00644 K14011 - qsa:O6P43_025896 613.994