Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00614 ATGGGAAGGGGTAGGGTTCAGCTCAAGAGGATTGAGAACAAGATCAATAGGCAGGTAACTTTCTCCAAAAGGAGAGCTGGGTTGGTTAAGAAAGCTCATGAGATCTCTGTGCTATGTGATGCTGAGGTTGCTTTGATTGTCTTCTCTCACAAAGGAAAGCTTTTTGAGTACGCTACTGATTCCTGTATGGACAAGATACTGGAGCGGTACGAGAGATACTCCTTTGCTGAGAGGCAGCTGGCTGGAAACGATTGTGCTTCAGAGGGAAATTGGACACTGGAGTACTCCCGGCTTAAGGTCAAGGTAGAGCTTTTGCAGAGAAATCATAGGCATTATATGGGAGAAGATTTGGGCTCATTGAATCTTAAGGAGCTTCAGAGTTTGGAACAACAGCTAGATTCTTCTCTAAAGCACATTCGGATGCGTAAAAACCAACTCATGTATGAATCGATTTCCGAGCTACAGAAAAAGGAGAAAGTGATTCAGGAGCAGAATAGCTTATTAGCAAAGAAGATCAAGGAGAATGAAAAAGCCAAGGCTCAGCAACAAAACTGGGAGCAGCCAAACCAAGCCCCCAATCCAACTCCCTTCCTACTTCCACAATCACTTCCTTTAAACATGGGTGGCAACTACCAAGAGGATACAACTGATGCGAGGAGGAACCAGCTTGACCTCACTCTGGAGCCATTATATTCGTGCAACCTTGGATGCTTTGCTGCTTGA 723 0.4495 MGRGRVQLKRIENKINRQVTFSKRRAGLVKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMDKILERYERYSFAERQLAGNDCASEGNWTLEYSRLKVKVELLQRNHRHYMGEDLGSLNLKELQSLEQQLDSSLKHIRMRKNQLMYESISELQKKEKVIQEQNSLLAKKIKENEKAKAQQQNWEQPNQAPNPTPFLLPQSLPLNMGGNYQEDTTDARRNQLDLTLEPLYSCNLGCFAA* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00614 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte11g00614 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte11g00614 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte11g00614 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte11g00614 240 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Pte11g00614 240 MobiDBLite consensus disorder prediction 175 214 - -
Pte11g00614 240 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte11g00614 240 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte11g00614 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte11g00614 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte11g00614 240 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pte11g00614 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Pte11g00614 240 FunFam Floral homeotic protein APETALA 1 13 68 - -
Pte11g00614 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte11g00614 240 Coils Coil 161 181 - -
Pte11g00614 240 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00614 Pte-Chr11 6512719 6516005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00614 1 241 MADS-box Gene Family AT1G26310 64.591 1.50e-109 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte11g00614 K-box 2.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00614 K09264 - gmx:100810129 369.392