Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00611 ATGGAATCTCGGGGTTGTCCCTCAGAAGGTAAAGGGCATTTCTTTCCTGAGGAAATTGATTTGCCAATGGATGTTCTCCTGAGAAGTGCAAAGGCCTTATTTGAATTGAATGACGAAGACTTCTGCGACTCCGAAAGAGATGGAGTTCTATCACCTGGAGAAGCAGTTGAAAACTTTAATTTCTTTGAAATGGGATCCCCCGTTTATTTCCAAAGTTCTTGTCAGAATAACAAATGTCTAGAGGCATCAAGCTATGATCTTGATTGTGATTTTAGCAAGCTATTGGACACTGCCTGTGATAATACCAGTCGCAACTCGTCTGCTGGGCAAGCTGAATCTCCATTAGAACATTCAATTTCCTTCGGGAAATCTATAAGCCCTGATTCATCATTAATTGATTTGGAACTTGGTATGTTGGATGATTTTACAGATGTTCAGTATTCCAAACCTGCAGAAGAGGGATCAAATGTATCTTTGGCATGCCAAACTACACTGGGAAAGAAGAACCAAACCGCAATGGTGTGCTATCTTGCACCCATTTGCCAGGTTTATGGTTGTAACATCGACCTTAGCCCCTTAAAAGACTACCATAAAAGGCACAAGGTATGCGATGTTCACTCAAAGGCAGGTAAAGTTGTTTTCAATGGCATCGAACAGAGGTTCTGTCAACAGTGTAGCAGGTTTCATCGGCTGGCGGAATTTGATGGTAATAAGCGCAGTTGTCGCAGACGCCTTGCAGGACATAATGAGCGTAGAAGAAAATCTGAATTTGACAATTCCTCTGGAAGACCACGTAAATTGATTCACTTATATAATGGTTCCAAATATCCTGGAATTTCACTGCTGCGGAAATCCCGGTGTGCTTTCGGCAACATATTACAGGGTGGCTTCTTTTATCCTGGAAAACATAAACAACTTCATCACAGTGAAGGATGCAAGAAGCCTCTGAAGGAGTCCATGTACATACCTAAGAAATTTGATCTTCTATCAAGATCCTCCCTCAATGGCAATGGTAAAAGACTCTCTTCTGAAATTGGTTCATCTGCTAGACAGAATTATAATACTTATGGATCAGCATCAGCCATTCAGGGGAACTCCAGCTCTGCTCTCTCTCTTCTGTCACTTCAGTCACAGGCGCTGTCAAACCACACAGCAGGAAATTCCATAGCTAGCACTCTAACTTTTCAAGGCATATCTGCCAACCCCAATGATTTGCAGCACTCTCATAATCCTTTCAGGGATAGCTCGACAGAAGATTTTATAGTCAGCGATTCTTTTTTTCATGGGTTGAACTCTTCGAAAGTTGATCAGATTGGAACAATGATGCTTTATGATGGAGGTCATGCTGTTGACCTTGAAGTGTGCAGAAATGATTTTCACCAGTCTAATTTATCCAATGTCAACATTTCCCCTGCACGTGGATGCACTGTCAATCTTCTTCAACTGTCAACACATCTTCATAGAGTGGAACAACAAAGACAATTTATCCTAGGAAAGCAAGGAAAGACGACTTTTGTTGCTTCCCCAGCAATTAACTGGGGTTCAATCCAATAA 1554 0.4163 MESRGCPSEGKGHFFPEEIDLPMDVLLRSAKALFELNDEDFCDSERDGVLSPGEAVENFNFFEMGSPVYFQSSCQNNKCLEASSYDLDCDFSKLLDTACDNTSRNSSAGQAESPLEHSISFGKSISPDSSLIDLELGMLDDFTDVQYSKPAEEGSNVSLACQTTLGKKNQTAMVCYLAPICQVYGCNIDLSPLKDYHKRHKVCDVHSKAGKVVFNGIEQRFCQQCSRFHRLAEFDGNKRSCRRRLAGHNERRRKSEFDNSSGRPRKLIHLYNGSKYPGISLLRKSRCAFGNILQGGFFYPGKHKQLHHSEGCKKPLKESMYIPKKFDLLSRSSLNGNGKRLSSEIGSSARQNYNTYGSASAIQGNSSSALSLLSLQSQALSNHTAGNSIASTLTFQGISANPNDLQHSHNPFRDSSTEDFIVSDSFFHGLNSSKVDQIGTMMLYDGGHAVDLEVCRNDFHQSNLSNVNISPARGCTVNLLQLSTHLHRVEQQRQFILGKQGKTTFVASPAINWGSIQ* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00611 517 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Pte11g00611 517 Pfam SBP domain 181 254 IPR004333 GO:0003677
Pte11g00611 517 Gene3D - 177 242 IPR036893 GO:0003677|GO:0005634
Pte11g00611 517 FunFam Squamosa promoter-binding-like protein 14 173 242 - -
Pte11g00611 517 SUPERFAMILY SBT domain 179 258 IPR036893 GO:0003677|GO:0005634
Pte11g00611 517 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 137 446 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00611 Pte-Chr11 6481421 6484848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00611 167 496 SBP-box Gene Family AT1G69170 33.535 1.87e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte11g00611 SBP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00611 - - vri:117919650 327.02