Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00605 ATGGCTTCTCGCAGAGTCTTATCGTCATTACTCCGATCATCATCACGACGATCGTCTTCAAGCAAGTCTCCATTCGCAAATTCAAGCCCTCGGCTCTCATCCCCATCGATTAGTCATCGTCCATCACCCTGCGGTTACCTGCTCACCAGGGTAGCCGATTATGCTACTTCTGCCGCAGCTGCTTCATCGCCGGCCCCACCAGCTCCGGCCAAGAAGGATGGTGGGAAAGGGAAGATCACTGATGAATTTACTGGTAAAGGTTCGATTGGACAAGTTTGTCAGGTCATTGGTGCTGTTGTTGATGTGAGATTCGAGGAAGGATTGCCACCGATCCTTACTGCTCTTGAGGTGTTGGATAACTCCATCCGCTTGGTGCTTGAAGTGGCTCAACATTTGGGTGAAAGTATGGTTAGGACTATTGCTATGGATGGTACTGAAGGTCTTGTGAGAGGACAGCGCGTGCTTAATACTGGATCGCCAATTACGGTTCCTGTTGGAAGAGCTACACTTGGCCGTATCATCAATGTTATTGGAGAGCCTATAGATGAGAAGGGAGATCTAAAAACCGACCATTATCTGCCCATTCATAGAGAGGCTCCTGCATTTGTTGATCAAGCAACAGAACAGCAGATCCTAGTCACCGGAATTAAGGTTGTGGACCTCCTTGCTCCATACCAAAGGGGAGGGAAGATTGGGCTCTTTGGAGGTGCTGGTGTGGGAAAAACTGTGCTTATTATGGAGCTGATTAACAATGTCGCTAAGGCTCATGGTGGTTTCTCTGTATTTGCTGGTGTTGGGGAAAGAACTCGTGAGGGCAATGACTTGTACAGAGAAATGATTGAAAGTGGTGTCATTAAGCTAGGTGACAAGCAGGCTGAAAGCAAGTGTGCTCTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCCCGTGTTGGTCTTACTGGGCTTACTGTGGCTGAACACTTCCGTGATGCTGAAGGGCAAGACGTGCTTCTTTTCATTGACAACATTTTCCGCTTTACCCAAGCTAACTCAGAAGTGTCAGCTTTGCTTGGCCGTATCCCATCTGCTGTCGGTTATCAACCAACGTTGGCTACAGATCTTGGAGGCCTTCAAGAACGAATTACAACTACCAAGAAAGGTTCTATTACCTCTGTTCAGGCGATCTATGTGCCTGCTGATGATTTGACAGATCCTGCTCCTGCTACTACCTTTGCTCACTTGGATGCCACCACTGTGTTGTCAAGACAGATTTCTGAGCTCGGCATCTATCCCGCCGTGGATCCTCTGGATTCTACATCGCGGATGCTCTCTCCCCATATTTTGGGTGATGATCACTATAATACCGCTCGTGGTGTGCAGAAGGTTCTTCAAAATTACAAAAATCTTCAAGATATTATTGCCATTCTTGGAATGGATGAGCTCAGTGAAGACGACAAATTGACTGTTGCTCGGGCGCGTAAGATTCAAAGGTTTTTGAGCCAGCCTTTCCATGTTGCGGAAGTTTTCACAGGTGCCCCTGGCAAGTATGTGGAGCTGAAGGAGAGCATTAACAGTTTCCAGGGTGTTTTGGATGGTAAATATGATGACCTGTCAGAGCAATCGTTTTACATGGTTGGAGGTATTGATGAGGTTATCGCCAAGGCAGACAAGATAGCTAAGGAATCAGCTGCTTAA 1683 0.4736 MASRRVLSSLLRSSSRRSSSSKSPFANSSPRLSSPSISHRPSPCGYLLTRVADYATSAAAASSPAPPAPAKKDGGKGKITDEFTGKGSIGQVCQVIGAVVDVRFEEGLPPILTALEVLDNSIRLVLEVAQHLGESMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDLKTDHYLPIHREAPAFVDQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGDDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESINSFQGVLDGKYDDLSEQSFYMVGGIDEVIAKADKIAKESAA* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00605 560 Gene3D - 161 438 IPR027417 -
Pte11g00605 560 Pfam ATP synthase alpha/beta family, beta-barrel domain 92 158 IPR004100 GO:0046034|GO:1902600
Pte11g00605 560 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 215 436 IPR000194 GO:0005524
Pte11g00605 560 NCBIfam F0F1 ATP synthase subunit beta 89 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Pte11g00605 560 FunFam ATP synthase subunit beta 1 54 - -
Pte11g00605 560 Gene3D - 78 160 - -
Pte11g00605 560 MobiDBLite consensus disorder prediction 58 79 - -
Pte11g00605 560 FunFam ATP synthase subunit beta 439 558 - -
Pte11g00605 560 FunFam ATP synthase subunit beta 78 160 - -
Pte11g00605 560 FunFam ATP synthase subunit beta 161 438 - -
Pte11g00605 560 SMART AAA_5 227 499 IPR003593 GO:0016887
Pte11g00605 560 CDD ATP-synt_F1_beta_N 88 161 - -
Pte11g00605 560 Coils Coil 544 560 - -
Pte11g00605 560 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 86 160 IPR036121 GO:0046034|GO:1902600
Pte11g00605 560 CDD F1-ATPase_beta_CD 162 441 - -
Pte11g00605 560 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 439 555 - -
Pte11g00605 560 CDD ATP-synt_F1_beta_C 443 550 - -
Pte11g00605 560 Gene3D - 439 560 IPR024034 -
Pte11g00605 560 PANTHER ATP SYNTHASE 73 557 - -
Pte11g00605 560 Gene3D ATP synthase, F1 beta subunit 1 54 IPR042079 -
Pte11g00605 560 Hamap ATP synthase subunit beta [atpB]. 87 554 IPR005722 GO:0015986|GO:0045261|GO:0046933
Pte11g00605 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 442 IPR027417 -
Pte11g00605 560 PIRSF ATPase_subunit_beta 7 560 - -
Pte11g00605 560 Pfam ATP synthase F1 beta subunit 1 50 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Pte11g00605 560 ProSitePatterns ATP synthase alpha and beta subunits signature. 427 436 IPR020003 GO:0005524
Pte11g00605 560 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00605 Pte-Chr11 6391291 6394720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00605 125 497 Primary Pumps ATPases(2) AT1G20260 28.000 3.70e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00605 K02133 - tcc:18609100 963.755