Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00582 ATGAACTGGAATAGGGATATACTGCATAGTTGCAAGACTTCCTGGGAATTGAATTCAGCCCTCTTGATGGAATCTCGGGGTTGTCCCTCAGAAGGTAAAGGGCATTTCTTTCCTGAGGAAATTGATTTGCCAATGGATGTTCTCCTGAGAAGTGCAAAGGCCTTATTTGAATTGAATGACGAAGACTTCTGCGACTCCGAAAGAGATGGAGTTCTATCACCTGGAGAAGCAGTTGAAAACTTTAATTTCTTTGAAATGGGATCCCCCGTTTATTTCCAAAGTTCTTGTCAGAATAACAAATGTCTAGAGGCATCAAGCTATGATCTTGATTGTGATTTTAGCAAGCTATTGGACACTGCCTGTGATAATACCAGTCGCAACTCGTCTGCTGGGCAAGCTGAATCTCCATTAGAACATTCAATTTCCTTCGGGAAATCTATAAGCCCTGATTCATCATTAATTGATTTGGAACTTGGTATGTTGGATGATTTTACAGATGTTCAGTATTCCAAACCTGCAGAAGAGGGATCAAATGTATCTTTGGCATGCCAAACTACACTGGGAAAGAAGAACCAAACCGCAATGGTGTGCTATCTTGCACCCATTTGCCAGGTTTATGGTTGTAACATCGACCTTAGCCCCTTAAAAGACTACCATAAAAGGCACAAGGTATGCGATGTTCACTCAAAGGCAGGTAAAGTTGTTTTCAATGGCATCGAACAGAGGTTCTGTCAACAGTGTAGCAGGTTTCATCGGCTGGCGGAATTTGATGGTAATAAGCGCAGTTGTCGCAGACGCCTTGCAGGACATAATGAGCGTAGAAGAAAATCTGAATTTGTCAATTCCTCTGGAAGACCACGTAAATTGATTCACTTATATAATGGTTCCAAATATCCTGGAATTTCACTGCTGCGGAAATCCCGGTGTGCTTTCGGTAACATATTACAGGGTGGCTTCTTTTATCCTGGAAAACATAAACAACTTCATCACAGTGAAGGATGCAAGAAGCCTCTGAAGGAGTCCATGTACATACCTAAGAAATTTGATCTTCTATCAAGATCCTCCCTCAATGGCAATGGTAAAAGACTCTCTTCTGAAATTGGTTCATCTGCTAGACAGAATTATAATACTTATGGATCAGCATCAGCCATTCAGGGGAACTCCAGCTCTGCTCTCTCTCTTCTGTCACTTCAGTCACAGGCGCTGTCAAACCACACAGCAGGAAATTCCATAGCTAGCACTCTAACTTTTCAAGGCATATCTGCCAACCCCAATGATTTGCAGCACTCTCATAATCCTTTCAGGGATAGCTCGACAGAAGATTTTATAGTCAGCGATTCTTTTTTTCATGGGTTGAACTCTTCGAAAGTTGATCAGATTGGAACAACGATGCTTTATGATGGAGGTCATGCTGTTGACCTTGAAGTGTGCAGAAATGATTTTCACCAGTCTAATTTATCCAATGTCAACATTTCCCCTGCACGTGGATGCACTGTCAATCTTCTTCAACTGTCAACACATCTTCATAGAGTGGAACAACAAAGACAATTTATCCTAGGAAAGCAAGGAAAGACGACATTTGTTGCTTCCCCAGCAATTAACTGGGGTTCGATCCAATAA 1620 0.4173 MNWNRDILHSCKTSWELNSALLMESRGCPSEGKGHFFPEEIDLPMDVLLRSAKALFELNDEDFCDSERDGVLSPGEAVENFNFFEMGSPVYFQSSCQNNKCLEASSYDLDCDFSKLLDTACDNTSRNSSAGQAESPLEHSISFGKSISPDSSLIDLELGMLDDFTDVQYSKPAEEGSNVSLACQTTLGKKNQTAMVCYLAPICQVYGCNIDLSPLKDYHKRHKVCDVHSKAGKVVFNGIEQRFCQQCSRFHRLAEFDGNKRSCRRRLAGHNERRRKSEFVNSSGRPRKLIHLYNGSKYPGISLLRKSRCAFGNILQGGFFYPGKHKQLHHSEGCKKPLKESMYIPKKFDLLSRSSLNGNGKRLSSEIGSSARQNYNTYGSASAIQGNSSSALSLLSLQSQALSNHTAGNSIASTLTFQGISANPNDLQHSHNPFRDSSTEDFIVSDSFFHGLNSSKVDQIGTTMLYDGGHAVDLEVCRNDFHQSNLSNVNISPARGCTVNLLQLSTHLHRVEQQRQFILGKQGKTTFVASPAINWGSIQ* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00582 539 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 159 468 IPR044817 GO:0003677
Pte11g00582 539 ProSiteProfiles Zinc finger SBP-type profile. 200 277 IPR004333 GO:0003677
Pte11g00582 539 FunFam Squamosa promoter-binding-like protein 14 195 264 - -
Pte11g00582 539 SUPERFAMILY SBT domain 201 278 IPR036893 GO:0003677|GO:0005634
Pte11g00582 539 Gene3D - 199 264 IPR036893 GO:0003677|GO:0005634
Pte11g00582 539 Pfam SBP domain 203 276 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00582 Pte-Chr11 6086313 6089730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00582 189 518 SBP-box Gene Family AT1G69170 33.535 1.12e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte11g00582 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00582 - - vri:117919650 328.946