Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00580 ATGGGGAGGGGAAGAGTAGAGTTGAAAAGGATTGAGAACAAAATAAATCGACAAGTCACATTCGCTAAGAGAAGGAGTGGTCTACTGAAGAAGGCGTACGAACTTTCAGTTCTGTGTGATGCAGAAGTTGCACTGATCATCTTCTCTAGTCGTGGGAAGCTTTATGAGTTTTGCAGCAGTGCTAGCATGTTCAAGGCAATTGAGAGGTATCGACAATGCACTTATAACTCTTTGGATTCCAATCAACGTGAACTGGAAAGCCAGAGAAGCTTCCAAGAATATCAGAAGCTTAAGGCCAAAGTGGAGCTGCTGCAACAATCGCAGAGAAACCTTCTTGGAGAAGATTTGAAGAATTTAGGCATGAAGGAGCTTGAGGAAATAGAGCGTCAGCTGGATACAGCATTGAAGCAAATCAGGTCAAGGAAGACAGATAATTTGCTGTGTCAACTCTCTGATCTACAAAGGAAGGAAGAGATGCTGTTGGAAACCAACAATGCTTTAAGAAATAAGATTGCTAGTTTATCTCGGCTTCATGTTCATGCTGTTCAGTTGGAGGAAAGTAATGTTGCCCTCTTGTCTTTATTGAATGAGAGGGAAGAAGATACTTCATATCAGCGAATTCAACCCGGCATGTATTTTGCATCAGGACAATGTGATAATACCCTGCATAGTGGGTACTTCCTCAATTCCTCTTAA 696 0.4181 MGRGRVELKRIENKINRQVTFAKRRSGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSASMFKAIERYRQCTYNSLDSNQRELESQRSFQEYQKLKAKVELLQQSQRNLLGEDLKNLGMKELEEIERQLDTALKQIRSRKTDNLLCQLSDLQRKEEMLLETNNALRNKIASLSRLHVHAVQLEESNVALLSLLNEREEDTSYQRIQPGMYFASGQCDNTLHSGYFLNSS* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00580 231 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte11g00580 231 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Pte11g00580 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte11g00580 231 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pte11g00580 231 FunFam MADS-box transcription factor 1 13 88 - -
Pte11g00580 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte11g00580 231 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte11g00580 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte11g00580 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte11g00580 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte11g00580 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pte11g00580 231 Coils Coil 94 114 - -
Pte11g00580 231 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Pte11g00580 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte11g00580 231 Coils Coil 150 170 - -
Pte11g00580 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte11g00580 231 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00580 Pte-Chr11 6065070 6068517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00580 1 182 MADS-box Gene Family AT5G15800 66.120 1.71e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte11g00580 K-box 5.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00580 K09264 - gmx:100811049 266.929