Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00579 ATGACTCCTGGCCAAATACCGCCGTCAATTTTGTCAAACATGGGAAGGGGTAGGGTTCAGCTCAAGAGGATTGAGAACAAGATCAATAGGCAGGTAACTTTCTCCAAAAGGAGAGCTGGGTTGGTTAAGAAAGCTCATGAGATCTCTGTGCTATGTGATGCTGAGGTTGCTTTGATTGTCTTCTCTCACAAAGGAAAGCTTTTTGAGTACGCTACTGATTCCTGTATGGACAAGATACTGGAGCGGTACGAGAGATACTCCTTTGCTGAGAGGCAGCTGGCTGGAAACGATTGTGCTTCAGAGGGAAATTGGACACTGGAGTACTCCCGGCTTAAGGTCAAGGTAGAGCTTTTGCAGAGAAATCATAGGCATTATATGGGAGAAGATTTGGGCTCATTGAATCTCAAGGAGCTTCAGAGTTTGGAACAACAGCTAGATTCTTCTCTAAAGCACATTCGGATGCGTAAAAACCAACTCATGTATGAATCGATTTCCGAGCTACAGAAAAAGGAGAAAGTGATTCAGGAGCAGAATAGCTTATTAGCAAAGAAGATCAAGGAGAATGAAAAAGCCAAGGCTCAGCAACAAAACTGGGAGCAGCCAAACCAAGCCCCCAATCCAACTCCCTTCCTACTTCCACAATCACTTCCTTTAAACATGGGTGGCAACTACCAAGAGGATACAACTGATGCGAGGAGGAACCAGCTTGACCTCACTCTGGAGCCATTATATTCGTGCAACCTTGGATGCTTTGCTGCTTGA 762 0.4514 MTPGQIPPSILSNMGRGRVQLKRIENKINRQVTFSKRRAGLVKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMDKILERYERYSFAERQLAGNDCASEGNWTLEYSRLKVKVELLQRNHRHYMGEDLGSLNLKELQSLEQQLDSSLKHIRMRKNQLMYESISELQKKEKVIQEQNSLLAKKIKENEKAKAQQQNWEQPNQAPNPTPFLLPQSLPLNMGGNYQEDTTDARRNQLDLTLEPLYSCNLGCFAA* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00579 253 CDD MADS_MEF2_like 15 87 IPR033896 GO:0000977|GO:0045944
Pte11g00579 253 Coils Coil 174 194 - -
Pte11g00579 253 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Pte11g00579 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 14 196 - -
Pte11g00579 253 ProSitePatterns MADS-box domain signature. 16 70 IPR002100 GO:0003677|GO:0046983
Pte11g00579 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677|GO:0046983
Pte11g00579 253 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Pte11g00579 253 Pfam K-box region 101 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte11g00579 253 Gene3D - 26 97 IPR036879 GO:0003677|GO:0046983
Pte11g00579 253 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Pte11g00579 253 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Pte11g00579 253 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Pte11g00579 253 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte11g00579 253 FunFam Floral homeotic protein APETALA 1 26 81 - -
Pte11g00579 253 SUPERFAMILY SRF-like 15 103 IPR036879 GO:0003677|GO:0046983
Pte11g00579 253 MobiDBLite consensus disorder prediction 188 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00579 Pte-Chr11 6054542 6058391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00579 14 254 MADS-box Gene Family AT1G26310 64.591 3.58e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte11g00579 K-box 2.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00579 K09264 - gmx:100810129 369.392