Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00562 ATGGCAAACTATTTGATTCTCTTGGCTCACGAGATTTGCCAAACACTAGGAGGACATAGAGCGAGTCACAAAAAACCCAAGGTCACAGCGGAAGAGAACAAGTCATCATCATCGCAATCAGTACCGGCCGAAACGCCTCCGCTGCAGTCTACTGATGATGGTGAGTTGGAATTCGAAGGTGAAGAACCGAGCCAAGTCAAAAGTACTATGATCCTTGCTCCAGTTCAGGTGTCGTCGTCTACAAGCGGAGGAATCGATCAGAACAAGGCCAAGATTTACGAGTGTTCAATCTGTGGATCAGAGTTTTCATCTGGTCAAGCCTTGAGTGGACACATGAGGCGTCATAGGGCTGCACTGAGCACGGGTCAAATGGTTGGCTTGAACATCAGCAGTGACGACAGAGTCTGA 408 0.4853 MANYLILLAHEICQTLGGHRASHKKPKVTAEENKSSSSQSVPAETPPLQSTDDGELEFEGEEPSQVKSTMILAPVQVSSSTSGGIDQNKAKIYECSICGSEFSSGQALSGHMRRHRAALSTGQMVGLNISSDDRV* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00562 135 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Pte11g00562 135 SUPERFAMILY beta-beta-alpha zinc fingers 90 116 IPR036236 -
Pte11g00562 135 Gene3D Classic Zinc Finger 67 125 - -
Pte11g00562 135 FunFam Zinc finger protein 89 116 - -
Pte11g00562 135 SMART c2h2final6 93 115 IPR013087 -
Pte11g00562 135 MobiDBLite consensus disorder prediction 32 47 - -
Pte11g00562 135 PANTHER ZINC FINGER PROTEIN ZAT5 13 117 - -
Pte11g00562 135 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Pte11g00562 135 MobiDBLite consensus disorder prediction 18 66 - -
Pte11g00562 135 Pfam C2H2-type zinc finger 93 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00562 Pte-Chr11 5893436 5893986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00562 14 121 C2H2 Transcription Factor Family AT2G28200 44.037 1.15e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g00562 zf-C2H2_6 1.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00562 - - qsa:O6P43_000387 108.997