Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00560 ATGGATGATGATGCATTGAACATGCGCAATTGGGGCTATTATGAGCCATCCTTCCAGGGGCACCTGGGGCTGCAGCTCATGTCAAGCATAACAGATCGCGACACAAAGCCTTTTTTATCTGGGCGCGATCCTACTGTACTAATGAATTCAAATGGAGCTTTCCATCCTCGTGATTGTCTTGTTCCTGAAGCACAAATTTCTATGAATTATATGCGAGACAGTTGGTTAAACCACAGAGATAAATTTCTAAATATGTTACCAACAAATCCTAGCTACGCTGTTGCGCCAGAAACATCTGCAGCTCACTCGTTGCAGATGGTACAGCAACCTGATGCACCAAGAGTCGAGAGAGTGATTACTGAAGAAACAACGGTTAAAAAGGAAGGTGGGCGGCAAAGGAAATGTCAGGTGAATGGTGCCCCTAAGGCCCCAAAAGTGAGGAAACCGCGGAAGCAAAAGGATCATATTAACCCTTCTGTTCAACGAGCGAAACCACCTAGGAAGAGAATGGACATCGTCATAAATGGGATTGATATGGACATAACTAGCCTGCCCATTCCTGTTTGCTCATGCACAGGAATGTCCCAGCAGTGTTACCGTTGGGGATGTGGTGGTTGGCAGTCAGCTTGCTGTACAACTAATGTGTCCATGTACCCTTTACCAATGAGCACCAAAAGGCGAGGTGCTAGAATTGCTGGACGGAAAATGAGCCAAGGTGCTTTTAAGAAGGTGCTGGAGAAACTTGCAGCAGAAGGTTATAATTTTGCTAACCCCATTGATCTAAAGACTCATTGGGCTAGACATGGTACCAACAAGTTTGTCACAATCAGGTAG 834 0.4556 MDDDALNMRNWGYYEPSFQGHLGLQLMSSITDRDTKPFLSGRDPTVLMNSNGAFHPRDCLVPEAQISMNYMRDSWLNHRDKFLNMLPTNPSYAVAPETSAAHSLQMVQQPDAPRVERVITEETTVKKEGGRQRKCQVNGAPKAPKVRKPRKQKDHINPSVQRAKPPRKRMDIVINGIDMDITSLPIPVCSCTGMSQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00560 277 Pfam GAGA binding protein-like family 1 277 IPR010409 -
Pte11g00560 277 PANTHER - 1 277 IPR010409 -
Pte11g00560 277 MobiDBLite consensus disorder prediction 127 166 - -
Pte11g00560 277 SMART GAGA_bind_2 1 277 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00560 Pte-Chr11 5871687 5874247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00560 1 278 BBR or BPC Transcription factor family AT2G01930 58.249 1.95e-112 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Pte11g00560 GAGA_bind 2.5e-111 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00560 - - qsa:O6P43_032408 454.521