Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00503 ATGTGTGGAAAGCAAGAAGAAGAAGGAGGAGGACAGTATTCCCAAGCTATCAATAACTTTCAAAGCTTGCAAGAACAATTATATCTTCATCACCAACAGCAACAAATGATGCAGCAGCAGCAGCAGCAAAACAATGACCCAAATATCTTTGCAGGTGGGAGAGGATTGATGTTTCCTGAAGTTTCTCCAATCTTACAACCTTGGTCATTACCTCCTATGCACACCTTCAATCCAGCTCACTTCGCGGCCAACCCGGTCAGAGAGCATGCACATGATCCATTTCTTGTTCCTCCACCACCTCCATCATCGTATGCAAGCTTGTTCAATCGGAGAGTTCCTTCTCTACAGCTTGCATATGATGGTTCATCTTCTGACCATCTTAGGTTAATATCAGACACACTTGGACCGATGATTCAGCCAGGTTCAGTTCCCTTTGGTCTTCAAGCTGAGCTAAGTAAAATGACTGCACAGGAAATCATGGATGCTAAAGCCTTAGCAGCATCAAAGAGCCACAGTGAAGCTGAAAGGAGAAGAAGAGAAAGAATCAATAATCATCTTGCTAAGCTTCGCAGCTTATTGCCCAGTACAACCAAAACAGACAAAGCATCATTACTTGCAGAAGTGATTCAGCATGTGAAGGAACTCAAACGTCAAACTTCACTGATTGCAGAAACGAGTCCTGTCCCAACTGAGATTGATGAGCTAACCGTTGATTCAGCTGACGAGGATGGCAAGTTCGTGATTAAAGCTTCGCTGTGTTGCGAGGACAGAACAGACCTTTTACCTGACCTCATCAAGACTTTGAAAGCTTTACGCTTAAGAACCCTCAAAGCTGAGATAACAACTCTTGGAGGACGTGTTAAGAATGTGCTGTTTATCACGGGGGACGAGGATCCATGTGGGAGTAACAATGGTGGTGGACAAAACCAGCAGCAATATTGTATTAGCTCCATACAGGAAGCCCTCAAGGCAGTGATGGAGAAGGCTACTGGTGATGAGTCTTCCTCTGGAAGCGTTAAGAGGCAACGGACAGCTAACGTCAATATCATTGAACACAGGTCTTCATAA 1068 0.4448 MCGKQEEEGGGQYSQAINNFQSLQEQLYLHHQQQQMMQQQQQQNNDPNIFAGGRGLMFPEVSPILQPWSLPPMHTFNPAHFAANPVREHAHDPFLVPPPPPSSYASLFNRRVPSLQLAYDGSSSDHLRLISDTLGPMIQPGSVPFGLQAELSKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEIDELTVDSADEDGKFVIKASLCCEDRTDLLPDLIKTLKALRLRTLKAEITTLGGRVKNVLFITGDEDPCGSNNGGGQNQQQYCISSIQEALKAVMEKATGDESSSGSVKRQRTANVNIIEHRSS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00503 355 CDD bHLH_AtAIG1_like 161 239 - -
Pte11g00503 355 Pfam Helix-loop-helix DNA-binding domain 169 215 IPR011598 GO:0046983
Pte11g00503 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 222 IPR036638 GO:0046983
Pte11g00503 355 Gene3D - 161 222 IPR036638 GO:0046983
Pte11g00503 355 PANTHER TRANSCRIPTION FACTOR BHLH30 30 348 IPR045847 GO:0003700|GO:0006355
Pte11g00503 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Pte11g00503 355 SMART finulus 172 221 IPR011598 GO:0046983
Pte11g00503 355 FunFam transcription factor bHLH30 161 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00503 Pte-Chr11 4975743 4978309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00503 14 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 55.220 7.95e-109 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte11g00503 HLH 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00503 - - cave:132184452 489.574