Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00499 ATGACAACATCCCCGAAGCGAAGCAGAGAGGCAGAAGAAGAAGAAGATTATGTGGAGTACATTCCTGTGGCAAAAAGAAGGGAAATAGAACGTCAGAAGATTCTTCTACAGCGCAAAAGCAAGACTGCTTCTGGTGCTGCTGCTGCTGCTATTGAAGAAGAGTTGGAGAAATTGAAGGCTGCTGAAGCTAAACCGAGTCTTCTTATTAAGGCTTCACAGTTGAAACGTGATCAGCCCGAGGTTACTCCAACTGAGCAGATGCTGCAGCAAGAGAAGGAAATGATTGAGAATCTGTCCGATCGAAAGACACTGAGGCCAGTTGCTGAACTTGCTAAAGGGATCACTTATAGTGAGCCATTGTATACAGGTTGGAAGCCACCGTTGCACATCAGAAGAATGTCAAATAAACAATGTGATTTGATAAGAAAACAGTGGCACATTATAGTTGATGGTGAGGATATTCCACCCCCTATCAAGAATTTTAAGGATATGAGGTTTCCTGAAGCTGTCTTGAAGAAATTGAAAGGTAAAGGGATAGTGCAGCCTACACCTATTCAGGTGCAGGGTCTTCCAGTTATTTTGTCTGGTAGGGATATGATTGGGATTGCATTCACAGGATCAGGGAAAACTCTGGTTTTTGTACTTCCTATGATAATGGTTGCATTGCAAGAGGAGATCATGATGCCTATTGCTCCAGGTGAAGGACCGTTTGGTTTGATTGTCTGTCCGTCAAGGGAACTTGCTAGACAGACATATGAAGTTGTCGAACAGTTCTTAGAGCCACTGAGGGATGCCGGGTATCCAGAACTCAGGCCTTTGTTGTGTATTGGAGGGGTGGATATGAAATCACAACTGGAGATTGTGAAAAAGGGCGTACATATAGTTGTTGCTACCCCTGGGAGGTTGAAGGATATGTTGGCAAAGAAAAAGATGAATCTTGATAATTGTAGGTATTTGACATTGGATGAGGCTGATAGATTGGTAGATTTAGGATTTGAAGATGATATAAGAGAGGTGTTTGATCATTTAAAAGTTCAAAGGCAGACTCTCTTGTTCTCTGCAACAATGCCTACCAAAATCCAGAATTTTGCAAGGAGTGCATTGGTGAAACCAGTTGTAGTTAATGTTGGTAGAGCTGGAGCTGCAAATCTTGATGTTATTCAGGAAGTGGAGTATGTTAAGCAGGAGGCAAAAATTGTATATCTCCTTGAGTGCTTGCAAAAGACTCCACCGCCTGTTCTGATATTCTGTGAGAACAAGGCTGACGTGGATGACATTCATGAGTATCTCCTCTTGAAAGGAGTGGAAGCAGTGGCTGTTCATGGAGGTAAGGATCAAGAAGAAAGAGAGTATGCAATTGCAGCTTTCAAGGCAGGGAAGAAGGATGTGCTGGTGGCCACAGATGTTGCCTCGAAGGGTTTAGATTTTCCAGACATTCAGCATGTTATCAATTATGATATGCCTGCTGAAATCGAAAACTACGTCCACAGGATTGGTCGTACTGGGAGGTGTGGCAAGACAGGCATAGCGACAACATTTATAAATAAGAATCAAAGTGAGACAACTTTACTTGATCTCAAGCACCTCTTGCAAGAAGCAAAACAAAGAATCCCCCCTGTCTTGGCTGAGTTAAATGATCCCATGGAGGATATTGAGGCTATTGCTAATGCCAGTGGGGTCAAAGGCTGTGCATATTGTGGCGGTCTTGGTCATCGGATCCGGGATTGTCCTAAATTGGAACAACAGAAGAGCCAGGCAATCGCTAATACAAGGAGGGATTACTTTGGTTCCGGTGGATACCGAGGAGAAATCTAA 1815 0.4336 MTTSPKRSREAEEEEDYVEYIPVAKRREIERQKILLQRKSKTASGAAAAAIEEELEKLKAAEAKPSLLIKASQLKRDQPEVTPTEQMLQQEKEMIENLSDRKTLRPVAELAKGITYSEPLYTGWKPPLHIRRMSNKQCDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEAVLKKLKGKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVALQEEIMMPIAPGEGPFGLIVCPSRELARQTYEVVEQFLEPLRDAGYPELRPLLCIGGVDMKSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHLKVQRQTLLFSATMPTKIQNFARSALVKPVVVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDIEAIANASGVKGCAYCGGLGHRIRDCPKLEQQKSQAIANTRRDYFGSGGYRGEI* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00499 604 SUPERFAMILY Retrovirus zinc finger-like domains 562 585 IPR036875 GO:0003676|GO:0008270
Pte11g00499 604 FunFam Probable ATP-dependent RNA helicase DDX41 384 546 - -
Pte11g00499 604 ProSiteProfiles Zinc finger CCHC-type profile. 563 578 IPR001878 GO:0003676|GO:0008270
Pte11g00499 604 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 119 544 - -
Pte11g00499 604 Pfam DEAD/DEAH box helicase 183 362 IPR011545 GO:0003676|GO:0005524
Pte11g00499 604 Gene3D - 555 589 - -
Pte11g00499 604 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 374 IPR014001 -
Pte11g00499 604 CDD SF2_C_DEAD 386 514 - -
Pte11g00499 604 Pfam Helicase conserved C-terminal domain 398 505 IPR001650 -
Pte11g00499 604 Gene3D - 384 546 IPR027417 -
Pte11g00499 604 Pfam Zinc knuckle 562 578 IPR001878 GO:0003676|GO:0008270
Pte11g00499 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 520 IPR027417 -
Pte11g00499 604 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 545 IPR001650 -
Pte11g00499 604 FunFam Probable ATP-dependent RNA helicase DDX41 126 375 - -
Pte11g00499 604 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724
Pte11g00499 604 CDD DEADc_DDX41 170 375 IPR044113 GO:0000398|GO:0003724|GO:0005524
Pte11g00499 604 SMART helicmild6 424 505 IPR001650 -
Pte11g00499 604 SMART ultradead3 178 389 IPR014001 -
Pte11g00499 604 SMART c2hcfinal6 562 578 IPR001878 GO:0003676|GO:0008270
Pte11g00499 604 Coils Coil 516 536 - -
Pte11g00499 604 Gene3D - 127 378 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00499 Pte-Chr11 4939073 4940887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00499 147 544 Eukaryotic Initiation Factors Gene Family AT3G19760 31.266 1.24e-55 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00499 K13116 - sind:105158351 1051.58