LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte11g00497	ATGACTGGACCATCATGGTTGGTGGACCCAAAAAGAATTGCTACCAAAATCAAGACCGCTACTGGAACACATGAACATAGCAAAGTGCAATGGAAAAGCAATCCGACTAGATCTTGTCCAAATTGCGAATATATAATCGACAACAGTGATGTTGTCCATGAGTGGCCTGGTTTACCAAGAGGTGTAAAGTTTGATCCTTCTGACCAAGAGATAATAGAACACTTGCTTCGTAAGGTCGGTGATGGGAATTTAAAACCCCATCCTTTCATTAATGAGTTCATCCTTACTCTTGAGGGGGATGATGGAATATGTTACACCCACCCTCAAAATTTACCAGGTGTGAAACAAGATGGGAGTGTTTCCCACTTTTTTCATAGAGCAATCAAGGCTTACAATACTGGAACGCGCAAGCGTAGAAAAATACATGGTGAAGATTTTGGTGATGTCCGCTGGCATAAGACTGGAAGAACTAAACCTGTAATATTGGATGGATTTCAGAAAGGCTGTAAAAAGATTATGGTTCTCTACATGACCCTGGTTAGGGGAGGTAAAACAGAGAAAACCAATTGGGTAATGCATCAGTATCACCTTGGAACTGAGGAGGATGAGAAGGATGGGGAGTATGTCATTTCGAAAGTGTTTTACCAGCAGCAACCAATCATCAAAGGGAGTGATAAAAATGATGGTGGGAGTCCTGAAGCTGCTGAAGCATCCATAGTGAAAGTTGATCCAGTTACCCCTAAATCTGTAACTCCTGATCCTCCTCGCTCAGAAAAGCAATCTTCAGATTTTGAACTGGTACAGGAGCCAAATGTATCCACTGGTCCCATATATCAGCATCTTGTTACGGAGTATGTTGAAGATGACATACAGGCTGATGTTGAGGGGCCTGCACAACCTGATCAACAAAATGTTGAAAACCATCCGAATGAATTGATGGATGATAATGACAACCAAGCACAGGAAGAGTCAAAGTGGTGGGATAGTGAATCGCAACACTTGCTAGACTCTCAACAGCTTGTTGAGGCATTGTCTTTGTGTGATGACCTTCTTCAAAGCCAATCTCCTGATAGAGATGACAATGGGAATGATAGAGCCTTTGATGCCAAACCCCGTCTTTCTGACTATGCAAAGCTAGGGCCAGAGCACCTGAAAATGGATATTGAAGACTGTCAAAAGATTGAGCTTGACCCTGCAAACATTGAACTTGATACTCCACCAGAGTTCCGACTTAGCCAGCTGGAATTTGGGTCCCAGGATAGTTTTCTTGCTTGGGGCAGTAGCAAGTTAGGTGACTGA	1299	0.4296	MTGPSWLVDPKRIATKIKTATGTHEHSKVQWKSNPTRSCPNCEYIIDNSDVVHEWPGLPRGVKFDPSDQEIIEHLLRKVGDGNLKPHPFINEFILTLEGDDGICYTHPQNLPGVKQDGSVSHFFHRAIKAYNTGTRKRRKIHGEDFGDVRWHKTGRTKPVILDGFQKGCKKIMVLYMTLVRGGKTEKTNWVMHQYHLGTEEDEKDGEYVISKVFYQQQPIIKGSDKNDGGSPEAAEASIVKVDPVTPKSVTPDPPRSEKQSSDFELVQEPNVSTGPIYQHLVTEYVEDDIQADVEGPAQPDQQNVENHPNELMDDNDNQAQEESKWWDSESQHLLDSQQLVEALSLCDDLLQSQSPDRDDNGNDRAFDAKPRLSDYAKLGPEHLKMDIEDCQKIELDPANIELDTPPEFRLSQLEFGSQDSFLAWGSSKLGD*	433

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pte11g00497	432	Gene3D	NAC domain	67	220	IPR036093	GO:0003677\|GO:0006355
Pte11g00497	432	FunFam	NAC domain-containing protein 8	67	220	-	-
Pte11g00497	432	MobiDBLite	consensus disorder prediction	352	374	-	-
Pte11g00497	432	MobiDBLite	consensus disorder prediction	353	374	-	-
Pte11g00497	432	MobiDBLite	consensus disorder prediction	308	326	-	-
Pte11g00497	432	SUPERFAMILY	NAC domain	43	216	IPR036093	GO:0003677\|GO:0006355
Pte11g00497	432	ProSiteProfiles	NAC domain profile.	58	216	IPR003441	GO:0003677\|GO:0006355
Pte11g00497	432	MobiDBLite	consensus disorder prediction	295	326	-	-
Pte11g00497	432	MobiDBLite	consensus disorder prediction	221	272	-	-
Pte11g00497	432	Pfam	No apical meristem (NAM) protein	59	197	IPR003441	GO:0003677\|GO:0006355

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte11g00497	Pte-Chr11	4897285	4901519	Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte11g00497	37	238	NAC Transcription Factor Family	AT4G28500	55.825	2.18e-75	236

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Pte11g00497		NAM	1e-21	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte11g00497	-		-	jre:108993283	638.262

Showing 1 to 1 of 1 entries

Previous1Next