Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00493 ATGGATGGAGGTAGCAGTACAGATGAAAGCACCATGATAAGTACTGATTCCGTTTCCATGACCATTACACCGGTGATTACTTTGTCTACTTTTCCGGCAGCTAAGAAGTCACCGGAGAGCCCGACATGCCGTGTGGGCAGCGGTGCCAGCACTATTGTGGACCCGGAAAGTGGTGTTGAAGCTGAGTCAAGGAAGCTTCCTTCTTCGAAATACAAAGGAGTAGTACCTCAACCTAATGGTCGGTGGGGTGCTCAGATTTATGAGAAGCACCAACGTGTTTGGTTGGGGACTTTCAATGAAGAAGATGAAGCCGCCAAGGCATATGACACAGCAGCTCAAAGGTTTCGTGGCAAAGATGCTGTTACAAACTTCAAACCATTGGCAGCCGACAGTGGAGACGACGACATTGAAATTGCTTTCCTCAATAGGCATTCGAAAGCTGAGATCGTTGACATGCTGAGAAAACATACATACAGTGATGAACTTCAACAAAGCAAGAGAAGCTTAGGCTTGCTTGGCAGCGGACACTGTGGTTTTGAAAAGCAACTGCTTATGAACAATGAAGGTAAGCTCGATGCAGATGGTTCCTTATTCGGGTCCGCAGATCGGTTCATCTCCAAAGCGCGTGAGCAGCTATTTGAGAAGACCGTAACACCAAGTGATGTGGGGAAGCTGAATAGGCTTGTGATACCTAAGCAACATGCAGAGAAACACTTCCCATTGCCAGGTGGAAGTTCTAGCATGAAAGGTGTGCTTTTGAATTTTGAGGATGTTGGGGGAAAAGTATGGAGATTCAGATACTCTTATTGGAATAGTAGTCAAAGCTATGTCCTTACAAAAGGTTGGAGCAGGTTCGTGAAGGAGAAGAACCTTAAAGCCGGTGACATTGTGAGCTTTCAGAGATCAACCGGACCTGAAAAACAAATGTACATTGACTGGAAAGTGAGGGGTCCTGCTAGTGATCATGATCAGTCCACCGGAGATGGGGTTCGAGCTGGTGGCTTGAATCCAGTTGGACAAGTTCAGATGGTTAGATTATTTGGTGTCAACATTGATTTGAAATCACATGAAGGAGGAGTAGGAGGAGGAGCTGTCACTGCAAGTGGGGTTGTGAATTGTACTGGAGGATGTAATATAGGGAAGAGGAAATTAGGTATGGAGCTCTTAACATTAGATTATAGTAGTAAGAAAGCAAGGATCATTGGAGCTTTGTGA 1215 0.4543 MDGGSSTDESTMISTDSVSMTITPVITLSTFPAAKKSPESPTCRVGSGASTIVDPESGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAAKAYDTAAQRFRGKDAVTNFKPLAADSGDDDIEIAFLNRHSKAEIVDMLRKHTYSDELQQSKRSLGLLGSGHCGFEKQLLMNNEGKLDADGSLFGSADRFISKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPGGSSSMKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGPEKQMYIDWKVRGPASDHDQSTGDGVRAGGLNPVGQVQMVRLFGVNIDLKSHEGGVGGGAVTASGVVNCTGGCNIGKRKLGMELLTLDYSSKKARIIGAL* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00493 404 CDD AP2 69 124 IPR001471 GO:0003700|GO:0006355
Pte11g00493 404 Pfam AP2 domain 69 117 IPR001471 GO:0003700|GO:0006355
Pte11g00493 404 SMART B3_2 213 317 IPR003340 GO:0003677
Pte11g00493 404 Gene3D AP2/ERF domain 69 126 IPR036955 GO:0003700|GO:0006355
Pte11g00493 404 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 65 359 IPR044800 GO:0003700
Pte11g00493 404 FunFam AP2 domain-containing protein RAP2.8 69 126 - -
Pte11g00493 404 ProSiteProfiles AP2/ERF domain profile. 70 125 IPR001471 GO:0003700|GO:0006355
Pte11g00493 404 Gene3D - 203 327 IPR015300 -
Pte11g00493 404 SMART rav1_2 70 131 IPR001471 GO:0003700|GO:0006355
Pte11g00493 404 SUPERFAMILY DNA-binding domain 69 125 IPR016177 GO:0003677
Pte11g00493 404 MobiDBLite consensus disorder prediction 33 72 - -
Pte11g00493 404 SUPERFAMILY DNA-binding pseudobarrel domain 211 312 IPR015300 -
Pte11g00493 404 ProSiteProfiles B3 DNA-binding domain profile. 213 319 IPR003340 GO:0003677
Pte11g00493 404 Pfam B3 DNA binding domain 213 310 IPR003340 GO:0003677
Pte11g00493 404 CDD B3_DNA 212 302 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00493 Pte-Chr11 4865994 4867889 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00493 5 403 RAV Transcription Factor Family AT1G13260 57.393 1.88e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Pte11g00493 B3 1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00493 K09287 - qsa:O6P43_032786 497.664