Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00491 ATGTGGGGACATGGCTCACAGTACAGGAAAGGACCTGAATCTTTGAGAGGGACAAAGCCAGCATCGTCCATGATGAGGCTGCCATGTTATTGTTGTGCTGAGGGGTGCAAGAACAACATAGATCATCCAAGGTCGAGACCTCTCAAGGATTTCAGGACACTGCAGACTCACTATAAGAGAAAGCATGGCGCTAAGCCATTTGGTTGCAGAAAATGTGGAAAGCCATTTGCAGTAAGAGGAGATTGGAGAACGCATGAGAAGAATTGCGGGAAGCTCTGGTTTTGTATCTGTGGTTCTGATTTTAAACACAAGAGATCTCTTAAAGACCATGTACGTGCATTTGGTGATGGCCATGCTGCGCATACTGTAGAAATGTGCAACCAATTCGAAGAAGGAGAAGACGAAGAGGATGAAGATGGTGAAGACAATGAAGTAGCTCTAGTTTATGGAACTCCATCTGGTCGTATGTCTGCTTATTTTTAA 483 0.4451 MWGHGSQYRKGPESLRGTKPASSMMRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAAHTVEMCNQFEEGEDEEDEDGEDNEVALVYGTPSGRMSAYF* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00491 160 Gene3D Classic Zinc Finger 63 128 - -
Pte11g00491 160 PANTHER ZINC FINGER PROTEIN WIP2 1 138 IPR043584 GO:0003700|GO:0010468
Pte11g00491 160 MobiDBLite consensus disorder prediction 1 20 - -
Pte11g00491 160 SUPERFAMILY beta-beta-alpha zinc fingers 52 87 IPR036236 -
Pte11g00491 160 FunFam Zinc finger protein WIP2 36 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00491 Pte-Chr11 4848962 4849444 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00491 1 124 C2H2 Transcription Factor Family AT1G13290 91.200 5.68e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g00491 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00491 - - qsa:O6P43_025679 296.975