Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00484 ATGAGGCTGCCATGTTATTGTTGTGCTGAGGGGTGCATGCATATGTGGGGACATGGCTCACAGTACAGGAAAGGACCTGAATCTTTGAGAGGGACAAAGCCAGCATCGTCCATGATGAGGCTGCCATGTTATTGTTGTGCTGAGGGGTGCAAGAACAACATAGATCATCCAAGGTCGAGACCTCTCAAGGATTTCAGGACACTGCAGACTCACTATAAGAGAAAGCATGGCGCTAAGCCATTTGGTTGCAGAAAATGTGGAAAGCCATTTGCAGTAAGAGGAGATTGGAGAACGCATGAGAAGAATTGCGGGAAGCTCTGGTTTTGTATCTGTGGTTCTGATTTTAAACACAAGAGATCTCTTAAAGACCATGTACGTGCATTTGGTGATGGCCATGCTCCGCATACTGTAGAAATGTGCAACCAAGTCGAAGAAGGAGAAGACGAAGAGGATGAAGATGGTGAAGACAATGAAGTAGCTCTAGTTTATGGAACTCCATCTGGTCGTATGTCTGCTTATTTTTAA 525 0.4514 MRLPCYCCAEGCMHMWGHGSQYRKGPESLRGTKPASSMMRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVEMCNQVEEGEDEEDEDGEDNEVALVYGTPSGRMSAYF* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00484 174 Gene3D Classic Zinc Finger 36 127 - -
Pte11g00484 174 SUPERFAMILY beta-beta-alpha zinc fingers 67 101 IPR036236 -
Pte11g00484 174 PANTHER ZINC FINGER PROTEIN WIP2 13 151 IPR043584 GO:0003700|GO:0010468
Pte11g00484 174 FunFam Zinc finger protein WIP2 50 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00484 Pte-Chr11 4802647 4803171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00484 13 138 C2H2 Transcription Factor Family AT1G13290 90.551 2.06e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g00484 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00484 - - qsa:O6P43_025679 306.219