Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00483 ATGCTGGATTTATCTGAGAAGATGCAACAAAGGATAACTTTTCCTGAATACATCGAAGCGTTAGAACGAGAACGCTCCAAAGTTGAAGTCTTTCAACGAGAGCTTCCTCTCTGTCTTGAGCTTCTCACACAAGCCATTGAAGCATCTAAGCAACAGTTATCAGGAACAACCACCGAGTACAATTTGCATGGACAATCTGAGTGTTCGGAGCAGACATCAACTGAAGGTCCTGCTCTGGAAGAGTTTATCCCTATAAAGAAAAGGTCTGCTTCTGATTTTCGTGACGGTGAGGATGCCGATAATGATGATGACAATGAAGATGAGCAACATTCTCACAAGTCTAAGCTTAGCAGAGAAAATGATGACATTGATGAGACGAAGTCGGATTGGCTGAGTTCTGTTCAGTTGTGGAATCCAGATCCACCTGTTGAAGAGAATGTGACAAGGAAGGAAATGGTGATGGAAGTAAAGAAAAATGGTGGGGCTTTCCTGCCTTTTCAGAGAGAGAAAACCGTTCGCAAGACAAATGCATCAACTAGTAAAGCTTCAACCTCTTCGGATCCGATGCCTTCGACAAGCTCTACAGCGGAAAGAGTCAGACAAGGAGATCATGTCGGAACCAGCCAAAACGAAGATAAAGAAGGTCTGAGGAAGCAGCGGAGGTGTTGGTCCCCCGAGTTGCACAAACGGTTCTTGAATGCCGTTCGGCAACTTGGTGGTTCAGATGTTGCAACACCAAAGCAAATTAGGGAGTTGATGAAGGTCGATGGGCTTACTAACGATGAAGTCAAAAGCCATTTGCAGAAATATCGGTTGCATACAAGAAGACCAAGCCCCGCGATTCACAACAATGCCAACCCTCAAGCACCTCAGTTTGTACTGGTGGGAGGCATATGGGTACAACCACCCGAATATGCTGCAATGGCCACCACAGCAGCTTCAGGGGATGCACCTAATTGTATCTATGCCCCAGTGGCTACGCATCCTCCTACAGCTCAACATCCACATGCTCCACTTGCTCAGAAGCCAAAACCAAAGAAACCTCAGCATTCTGAGCAGTACTCTCAGTCGGAAGAAAGGGCAAGTCATGATGGAGGGGGTGTTCATTCGAATTCTCCCGCTGCATCATCCTCTACTCACTAA 1143 0.4637 MLDLSEKMQQRITFPEYIEALERERSKVEVFQRELPLCLELLTQAIEASKQQLSGTTTEYNLHGQSECSEQTSTEGPALEEFIPIKKRSASDFRDGEDADNDDDNEDEQHSHKSKLSRENDDIDETKSDWLSSVQLWNPDPPVEENVTRKEMVMEVKKNGGAFLPFQREKTVRKTNASTSKASTSSDPMPSTSSTAERVRQGDHVGTSQNEDKEGLRKQRRCWSPELHKRFLNAVRQLGGSDVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPAIHNNANPQAPQFVLVGGIWVQPPEYAAMATTAASGDAPNCIYAPVATHPPTAQHPHAPLAQKPKPKKPQHSEQYSQSEERASHDGGGVHSNSPAASSSTH* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00483 380 MobiDBLite consensus disorder prediction 345 365 - -
Pte11g00483 380 NCBIfam myb-like DNA-binding domain, SHAQKYF class 218 273 IPR006447 GO:0003677
Pte11g00483 380 MobiDBLite consensus disorder prediction 324 380 - -
Pte11g00483 380 MobiDBLite consensus disorder prediction 106 128 - -
Pte11g00483 380 Gene3D - 217 275 - -
Pte11g00483 380 MobiDBLite consensus disorder prediction 81 95 - -
Pte11g00483 380 MobiDBLite consensus disorder prediction 204 219 - -
Pte11g00483 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 275 IPR017930 -
Pte11g00483 380 MobiDBLite consensus disorder prediction 171 203 - -
Pte11g00483 380 MobiDBLite consensus disorder prediction 164 219 - -
Pte11g00483 380 Pfam Myb-like DNA-binding domain 220 271 IPR001005 -
Pte11g00483 380 MobiDBLite consensus disorder prediction 61 76 - -
Pte11g00483 380 FunFam Myb family transcription factor 217 275 - -
Pte11g00483 380 MobiDBLite consensus disorder prediction 61 145 - -
Pte11g00483 380 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 356 IPR044787 GO:0003700|GO:0006355
Pte11g00483 380 SUPERFAMILY Homeodomain-like 216 276 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00483 Pte-Chr11 4781796 4784239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00483 2 327 G2-like Transcription Factor Family AT1G68670 48.837 1.92e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte11g00483 Myb_DNA-binding 4.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00483 - - qsa:O6P43_032783 443.736