Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00467 ATGAAGATTTTCGTCAAAACTCTGAAAGGTTCTCACTTCGAAATCGAAGTCGACTCTCAACACACGGTTTCTGAAGTGAAGAAAAATATTGAAACTGTTCAAGGTGCTGATGTCTATCCTGCTTCCCAGCAGATGCTCATCCACCAAGGGAAGGTTCTTAAAGACAACACAACATTGGAGGAAAATAAAGTTTCCGAAAATAGTTTTGTGGTCGTTATGTTAACTAAGAATAAGAGTACACCTGGTGAAGCTTCAACCACTGCAACTGCATCCTCAACGAAGACTTCTCAGACAAGTTCAACTCCTAAACCAGTTTCAACAGTCCCTCAAACGTCTCTAACAACTGGAACCCAGACTACATCTGGGACTAGTACTCTACCTGCTCCTTCCAGCTCCAGCTCCAGCTCCAGCTCCAACTGCCACTGCTGA 429 0.4382 MKIFVKTLKGSHFEIEVDSQHTVSEVKKNIETVQGADVYPASQQMLIHQGKVLKDNTTLEENKVSENSFVVVMLTKNKSTPGEASTTATASSTKTSQTSSTPKPVSTVPQTSLTTGTQTTSGTSTLPAPSSSSSSSSSNCHC* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00467 142 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 129 - -
Pte11g00467 142 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Pte11g00467 142 MobiDBLite consensus disorder prediction 76 142 - -
Pte11g00467 142 Gene3D - 1 80 - -
Pte11g00467 142 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pte11g00467 142 CDD Ubl_Rad23 1 74 - -
Pte11g00467 142 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pte11g00467 142 FunFam UV excision repair protein RAD23 1 80 - -
Pte11g00467 142 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00467 Pte-Chr11 4633050 4635686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00467 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 1.92e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00467 K10839 - qsa:O6P43_032759 143.28