Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00461 ATGCCAGAGCCTCGGAAGCAAACTGAAGATGAGATTGTACTATGCAAGAAGAGCAGGCAGAGTCCTTTTCTTTTTGCCGTTTCCAAAGTGAGGAAGCTTCGTGTGATCTGTACCGACCCTAATGCCACAGATGACTCGTCTAGCGAAGATGAAGGAAATTCAACTGTTACTAAGAAATTCAAACGCCGTATTATAACTGAAATCAATATCCCTGCTCGTTCAATTGGTTATGAAATTGCGAGTTCTTGTCAGGACTCTGACAATGGAGTCAAAAACTCCAGTGGTCTTAACCCCAAAAGGAAGAGGGATTTAGCTAAAACCCCATCAACTGCCAAAGGTCCTGTGAGATACAGGGGTGTTCGGCAAAGGAAATGGGGTAAATGGGCTGCAGAGATTCGTCACCCTTTTGAAGGGCGAAGGATTTGGTTGGGTACTTTCAACACTCCTGAGGAGGCCTCCGAGGCATATGAGGCAAAGAGACAAGAGTTTGAATTACGTGGTCATGAATATGGGAAGAGCAAGGTTGCCTCTGCTGCTGCTACCCCTGTTACACCGGTTTCTTCTGAAAAGAGCAACAACATTTGCTATTCGGCTGTGGTTTCTCAGTCAGACAACAAGGGTGCTAGTTCTACTACATCCGTGGACTCTGGAAGTGCATTCTCGCACACTTCACCTGCATCTGTGTTAGATTTGGATACTTCGGCATCTAATCATGTTTTGAATGACGCAAGTGTCACCGGAGAGGTTGTCGGTACTCATGATGTGGCTGCTGGATTTGCTGAGTTGCAGATACCTGATTTGAGTTTGATTCAGGAGCCGCTGTCTAATACTCCACTTGAATCGATGGAGCTCGACCTTAGTCTCGACCTGGATTGGATTGCCATGGATGAATTCCCGAAGAGTGTTGATGCTTATGAGTTTCTTGAGGGTATTCAATTCGGCGGTCTTGATAACGAGCCAAGTGAACTTCCTGATTACGATTTCGATGATATTGGTGCTGATGATTTCGTTGGCTGGATGGATGAAACTCTGAATATTCCATGCTCTTAA 1050 0.4543 MPEPRKQTEDEIVLCKKSRQSPFLFAVSKVRKLRVICTDPNATDDSSSEDEGNSTVTKKFKRRIITEINIPARSIGYEIASSCQDSDNGVKNSSGLNPKRKRDLAKTPSTAKGPVRYRGVRQRKWGKWAAEIRHPFEGRRIWLGTFNTPEEASEAYEAKRQEFELRGHEYGKSKVASAAATPVTPVSSEKSNNICYSAVVSQSDNKGASSTTSVDSGSAFSHTSPASVLDLDTSASNHVLNDASVTGEVVGTHDVAAGFAELQIPDLSLIQEPLSNTPLESMELDLSLDLDWIAMDEFPKSVDAYEFLEGIQFGGLDNEPSELPDYDFDDIGADDFVGWMDETLNIPCS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00461 349 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Pte11g00461 349 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Pte11g00461 349 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Pte11g00461 349 SUPERFAMILY DNA-binding domain 116 162 IPR016177 GO:0003677
Pte11g00461 349 MobiDBLite consensus disorder prediction 83 112 - -
Pte11g00461 349 Pfam AP2 domain 116 164 IPR001471 GO:0003700|GO:0006355
Pte11g00461 349 CDD AP2 116 167 IPR001471 GO:0003700|GO:0006355
Pte11g00461 349 Gene3D AP2/ERF domain 115 170 IPR036955 GO:0003700|GO:0006355
Pte11g00461 349 SMART rav1_2 116 175 IPR001471 GO:0003700|GO:0006355
Pte11g00461 349 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00461 Pte-Chr11 4583013 4585669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00461 30 348 AP2-EREBP Transcription Factor Family AT1G68550 34.535 1.74e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte11g00461 AP2 5.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00461 - - qsa:O6P43_032756 271.552