Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00456 ATGAGACCAGAAGGGAACCCGTTAGATCTCAACAACTTGCCAGATGAATACAGTAGAGATTGCAGCAAACAAGTCTTCGAGGAAGGTTCTTCGTCGAGAGATGGCTATATGAAAAAGAAAAGCGGCGCCAAGGATGAAAAAGATGACTGTGGGAAGGTCTATGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAATCTCAAGCACTTGGGGGACACATGAATCGTCATAGACAAGAGAGGGAGACAGAGACACTGAACCGAGCTCGTCAGCTGGTCTTTGGTAACGATAACCTAGCCGCCCCAGGGGGCCCTCACCTAGGATGTTGTCAACCAATTGGATCAGCCAGCTATCATTCAACTGAAACAGGCAGCATGGGAGACCCAACGGTGCCGCTAAGAATCTCAAGGTATTATTCAGGTGGTTCTTCATCATCGCTGGTACCACCGACACCGCTGTACTCCTCACCTTCTCGACCTCCTGTGTCTTTCGCGTCCCAGTACCCTTCAACGGTGCATCCAATGAACGATTACTATGTTGGTCATGTTCTCGGAGGTGGCAGCCAACAGTACAACCACCACCATCTCCACCACCCAAACTTAAACTATGATCATCACTCCAATTACACCTGTATCGGTGCACCAGTTGGGCAAGGGTTTAATGGTCGGTTCCCAGAAATGCCAGTCTTAGCTGGAATAGGATCGGGAGGAAGCAGCAACGGAGTTGGTAATGGTAGAGATGGGTCACTGCACAGTTCTGACCAGGAAGGGCTAAATTGGGGAAGGAGCAGCTATGCAGGAGGACATCAGCATTTGGACACCACAACAGCCATCAATCGGTTTCAAGATGGTTTCTAA 855 0.4901 MRPEGNPLDLNNLPDEYSRDCSKQVFEEGSSSRDGYMKKKSGAKDEKDDCGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNRARQLVFGNDNLAAPGGPHLGCCQPIGSASYHSTETGSMGDPTVPLRISRYYSGGSSSSLVPPTPLYSSPSRPPVSFASQYPSTVHPMNDYYVGHVLGGGSQQYNHHHLHHPNLNYDHHSNYTCIGAPVGQGFNGRFPEMPVLAGIGSGGSSNGVGNGRDGSLHSSDQEGLNWGRSSYAGGHQHLDTTTAINRFQDGF* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00456 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Pte11g00456 284 MobiDBLite consensus disorder prediction 234 270 - -
Pte11g00456 284 Gene3D Classic Zinc Finger 29 98 - -
Pte11g00456 284 MobiDBLite consensus disorder prediction 236 259 - -
Pte11g00456 284 PANTHER ZINC FINGER PROTEIN JAGGED 23 235 IPR045320 GO:0003700
Pte11g00456 284 SUPERFAMILY beta-beta-alpha zinc fingers 52 82 IPR036236 -
Pte11g00456 284 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Pte11g00456 284 MobiDBLite consensus disorder prediction 1 46 - -
Pte11g00456 284 MobiDBLite consensus disorder prediction 20 46 - -
Pte11g00456 284 FunFam Zinc finger protein STAMENLESS 1 27 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00456 Pte-Chr11 4508109 4510219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00456 4 218 C2H2 Transcription Factor Family AT1G13400 39.111 1.75e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00456 - - qsu:111996161 324.709