Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00451 ATGGGGAGGGTAAAGCTCAAAATAAAGAAGTTAGAGAACACAAATGGCCGTCAGGCAACTTACGCGAAAAGGAAGCAGGGAATTATGAAGAAGGCGAGTGAGTTATCTATACTGTGTGATACAGATATCGTCCTTCTCATGTTCTCACCAACTGGCAAGCCTTCACTATGTAAAGGATTGCGCAGCAACATTGAAGAAGTGATTGGAAAGTTTTCCCAACTAACTCCGCAAGAAAGAACAAAGAGGAAATTGGAAAGCCTTGAAGCACTCAAAAAGACGTTCAGAAAGGTAGACCATGATGTAAATATTCCAGAACTGTTGGGTACAAGAAATCAAAATATCGAGGACCTTTCTAACCAAGCTACATTTTTGAAAACTAAAGTTTCTGAAATACAGAACAGAATGATCTATTGGACTGAACCTGACAAGATCAATAACATTCAACATTTGGGGCAAATGGAGACTTCACTCCTTGATTCACTTAATCAAATTCGACTATGTAAGGAAAACATTCAAAAGCAGCAACTTATGTCTTTGGAAGGCACTGATCGGTTCAATGAGATGCATATACCCTTCAGAGTGAGTTCTGAACAGCAGCTTCAACCTTTCTCATGGATTTACAACACTGAGAACCCTCATGTTGTCTTAACTGAAGACAAAAAATTATCGGTCAATAGGGATGCGGAGTTTTCTTCAAGCTCCTCCTATGGGAGTCATGCCAGTTATATTGGCACTGGAAAAAGTCCAGATATATCACCTACATCACATGATCATGCTCTTCATCAATTAAACCGAGCTGTTCCACCGAGGTTTCAACTAGGAGGGCAATTCCCCTACCTGCCTTACAGTGTTGAGTTATTGAATGACTGCAAGATACAACCAGCAACTGCAGATATCAATCCACAGGAAAACCCTTTGAATCATTATTTTACTGGAAGCTTTGTAGCCCCTAGATCTGTATATGGTAGTAGCCACCCTACCTGGGGCGCCACGTCAGGCCACTGTACCATTCCTATGCCTGATGAGCATTTACATACCCAGGCAAACTTTCTTTAA 1056 0.411 MGRVKLKIKKLENTNGRQATYAKRKQGIMKKASELSILCDTDIVLLMFSPTGKPSLCKGLRSNIEEVIGKFSQLTPQERTKRKLESLEALKKTFRKVDHDVNIPELLGTRNQNIEDLSNQATFLKTKVSEIQNRMIYWTEPDKINNIQHLGQMETSLLDSLNQIRLCKENIQKQQLMSLEGTDRFNEMHIPFRVSSEQQLQPFSWIYNTENPHVVLTEDKKLSVNRDAEFSSSSSYGSHASYIGTGKSPDISPTSHDHALHQLNRAVPPRFQLGGQFPYLPYSVELLNDCKIQPATADINPQENPLNHYFTGSFVAPRSVYGSSHPTWGATSGHCTIPMPDEHLHTQANFL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00451 351 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Pte11g00451 351 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 198 - -
Pte11g00451 351 CDD MADS 2 54 - -
Pte11g00451 351 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Pte11g00451 351 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte11g00451 351 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte11g00451 351 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte11g00451 351 Coils Coil 114 134 - -
Pte11g00451 351 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte11g00451 351 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Pte11g00451 351 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Pte11g00451 351 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00451 Pte-Chr11 4434158 4437929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00451 1 264 Type I MADS-box Gene Family AT2G03060 57.565 6.74e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte11g00451 SRF-TF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00451 - - cave:132177790 435.261