Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00439 ATGGAGAAGGTTTTCGTGTGCAAGTTTTGCAATAAGAAGTTTCCTTGTGGGAAGTCACTGGGCGGTCACATCAGGACTCACATGAATGAGTATTCAGCTCATCAAAACGGTAACAAGGCCAGAGCCGATTTGGTCAAGTTAGCATCTTTAAATGGTGGCAGGAAGAAGAAGAGGGATTCTGCGACCTCTGAAGCGGCTGCTGATGGGAACTATGTTTACGGTCTTAGGGAGAACCCCAAAAGGACAATGAGGTTTGCAGATTCAAGCGCCACTGCATTTGAGGCCAAGTTCTGCAAAGAATGCGGTAAAGGCTTTGCATCTTTGAAAGCTCTCTGTGGCCACATGGCTTGTCATTCAGAAAAAGAGAGAGGCACCGACAACTTGGATGACAATTCTGGCATGAAGCATAAAGTGGCGATGGACAGCCAATCTGATACTGATACTTCAACTCCAACCCATCCAAGGAGATCACGGAGGATGAGATTGAAACCCCTCAGTGCTCAACCTTCTTCCCCTATAGCCAACAACTCTTCATTGACAGAGATTGAGCAGGAACAAGAAGAGGGCGCCAAATGTTTGTTGCTGTTGTCTAAGGATTATGGCTACAGGGGTCGCTTAAATTCAGTTGCACATTCTTCTGAAAACAAGTCAGTTAGTTTGGAGGTTAAATCTCCATGCACTGGTACCAAGATAGCTGGTAGGCATCTGAAGGCGGCCATGTCTAATGGTTCTGATCTTCAACTGATTAAGCAACGCAATGGAATTAAGTTGAAATCCGCTGAGATTGCTATTCCTGATGACTCAAACTCTCAGTATTTTTTGGGTGGTTATAATAAAGATGAGTCGGAAAGTTCAGTTGTTGGGTACCCCAGGAGTCGTGACTTGAAGAAGCCTAAAGTGGACAAGTCTGGGGTCCTGCATTATGGGTTTGAATCAGGAAAAGTTGGGAAGATAATCCGAGGTAAGCATTCTGAATCAAGCAAGAACTTTTTCAAGGACTCGAAGTTTGATCGAAGAGAAGGAACCATGAAGGAGAGTAATTTAAGGAAGGAAGAGAAGAATTACTCTTTTCGGTCTCATACGAACACTCACTGCAGGAAAATTGTCGCTGTTTTGAACAGTGAAGAAGTTCACGAAAGATTGACCAATAAAAATTTGAATAGCTGCTATGACACCACGTATGAGAGTGCTGAGCAAAGCACTGATTCTGATTCAATTTCATTTCCAGTGCATCGTGGGAGTAAACCCCTCAAGCAAAAGTTGTCAAGCAATTCCAAGAAGAAGAAGAAATTGGGTTTAAAGAAAACTAAGGGGCATGAGTGTCCCATCTGCTACAAGATTTTCAAAACAGGGCAAGCCTTAGGAGGTCACAAGAGGTCCCATTTTATTAGCGGTTCTGAAGAAAATGCAACTTTGGTGATCAAACAAAATACAGTTCAATGTCTAATTGACCTTAATCTTCCTGCTCCTTTTGATGAGTAA 1482 0.4305 MEKVFVCKFCNKKFPCGKSLGGHIRTHMNEYSAHQNGNKARADLVKLASLNGGRKKKRDSATSEAAADGNYVYGLRENPKRTMRFADSSATAFEAKFCKECGKGFASLKALCGHMACHSEKERGTDNLDDNSGMKHKVAMDSQSDTDTSTPTHPRRSRRMRLKPLSAQPSSPIANNSSLTEIEQEQEEGAKCLLLLSKDYGYRGRLNSVAHSSENKSVSLEVKSPCTGTKIAGRHLKAAMSNGSDLQLIKQRNGIKLKSAEIAIPDDSNSQYFLGGYNKDESESSVVGYPRSRDLKKPKVDKSGVLHYGFESGKVGKIIRGKHSESSKNFFKDSKFDRREGTMKESNLRKEEKNYSFRSHTNTHCRKIVAVLNSEEVHERLTNKNLNSCYDTTYESAEQSTDSDSISFPVHRGSKPLKQKLSSNSKKKKKLGLKKTKGHECPICYKIFKTGQALGGHKRSHFISGSEENATLVIKQNTVQCLIDLNLPAPFDE* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00439 493 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Pte11g00439 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Pte11g00439 493 Pfam C2H2-type zinc finger 98 120 - -
Pte11g00439 493 Pfam C2H2-type zinc finger 439 461 - -
Pte11g00439 493 Pfam C2H2-type zinc finger 4 28 - -
Pte11g00439 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 439 461 IPR013087 -
Pte11g00439 493 SMART c2h2final6 5 27 IPR013087 -
Pte11g00439 493 SMART c2h2final6 439 461 IPR013087 -
Pte11g00439 493 SMART c2h2final6 96 118 IPR013087 -
Pte11g00439 493 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Pte11g00439 493 Gene3D Classic Zinc Finger 1 66 - -
Pte11g00439 493 SUPERFAMILY beta-beta-alpha zinc fingers 3 118 IPR036236 -
Pte11g00439 493 ProSitePatterns Zinc finger C2H2 type domain signature. 441 461 IPR013087 -
Pte11g00439 493 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 492 - -
Pte11g00439 493 MobiDBLite consensus disorder prediction 120 142 - -
Pte11g00439 493 MobiDBLite consensus disorder prediction 400 432 - -
Pte11g00439 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Pte11g00439 493 MobiDBLite consensus disorder prediction 120 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00439 Pte-Chr11 4346365 4348026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00439 2 494 C2H2 Transcription Factor Family AT1G26610 37.121 2.69e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g00439 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00439 - - qsa:O6P43_025535 372.089