Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00422 ATGGACCGTCTTGCACGGCCGGTGACCACTCAATCCGCAGGGGGAACCGCCGTGGTGGGTTCATCGCAAGGTGGTAGTGGTTATGGCGTGTCAGTCGATATGGCAGTTCCATCGAGTTCAAGGCTGCCACTGCCTCCTCCTCCTCCAGCTTCTTCATCCCATAATAATGGTGACACAACGGTGGAGCATAATGAAGATTATAACGACGATGAGCCATTGATTCAAACAGCAGAATGTCGAATTTGTCAGGACGAAGACTGCATTGAGAATTTGGAGACACCTTGTGCCTGCAGTGGAAGTCTCAAGTATGCTCATAGAAAGTGTGTTCAGCATTGGTGCAATGAGAAAGGCGACATAATTTGTGAGATCTGTCACCAGCCTTACCAGCCTGGATACAATGCTCCACCTCCACGCCCTCGCCCTGAAGAAACTACCATTGACATTGTGTAA 450 0.4978 MDRLARPVTTQSAGGTAVVGSSQGGSGYGVSVDMAVPSSSRLPLPPPPPASSSHNNGDTTVEHNEDYNDDEPLIQTAECRICQDEDCIENLETPCACSGSLKYAHRKCVQHWCNEKGDIICEICHQPYQPGYNAPPPRPRPEETTIDIV* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00422 149 ProSiteProfiles Zinc finger RING-CH-type profile. 71 131 IPR011016 GO:0008270
Pte11g00422 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 134 IPR013083 -
Pte11g00422 149 MobiDBLite consensus disorder prediction 9 28 - -
Pte11g00422 149 MobiDBLite consensus disorder prediction 1 70 - -
Pte11g00422 149 SMART ringv_2 78 125 IPR011016 GO:0008270
Pte11g00422 149 SUPERFAMILY RING/U-box 76 129 - -
Pte11g00422 149 FunFam RING/FYVE/PHD zinc finger protein 67 135 - -
Pte11g00422 149 Pfam RING-variant domain 79 124 IPR011016 GO:0008270
Pte11g00422 149 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 52 138 IPR033275 -
Pte11g00422 149 CDD RING_CH-C4HC3_MARCH 79 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00422 Pte-Chr11 4220426 4222533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00422 56 138 C3H Transcription Factor Family AT1G50440 30.526 6.22e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00422 - - qsa:O6P43_025464 147.902