Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00416 ATGAGTTCTCTCTCTCTCAGTTCCAACTACGGAAAGGTTTCAACGGTTTCTTCTTCTCAAGAAAGCAGTTACGCAGGTAGGAGTAGCTCTGAGATGATGGACAATGGGGGATATAACTGGACTTTCCCATTCATGAGGGACTGCCTTATTGCAAGAAACAGTGAGGAGCACCATAGCAGTGATGATAAAGGCTCTGACTCTAGTGCTGGAGTTGGAGAAGAGAGTGAGGATTTTAATCACAATGTAAACCTCGTGGACAGGACCTGTAATGATAAACTAGTTAATGGCAAGGAGACAGATAGTGGCCAGTCTAAACTCTGTGCAAGAGGCCATTGGAGGCCTGCAGAAGACGCAAAGCTTAAGGAACTTGTTTCTCTTTACGGTCCTCAGAACTGGAACCTCATAGCAGAGAAGTTAGAGGGGAGATCAGGTAAGAGCTGTAGATTGAGATGGTTCAATCAGTTGGATCCCAGGATCAATAGGAGAGCTTTCAGTGAAGATGAAGAAGAAAGACTAATGCAAGCTCATAGAGTTTACGGTAACAAATGGGCCGTGATTGCTAGGCTTTTCCCCGGGAGAACTGATAACGCAGTAAAGAATCACTGGCATGTTATCATGGCTAGAAAGTACAGAGAGCAATCCAGTGCTTACAGGAGGAGGAAGCCGAGTCAAACTGTTTATAGACGAATGGAGGATAATCCATTGTTTCCTGATGCAGCTAGAAGAACAGCACCCTCACCCTACTTTCTCGGTGCGTTCTCCAATGGAGGATTCAGCAGTACCTCCAGTAGGTATCCTTATGGATCTTTCAATGGACATCTTGGTGGGGTTGATTTTGCATCAAACTCTAAACCCCACTTGAGTGGTGGGAGAGAAGCAAATTCAAGCTGCGAGGCTCCTCCCCAGAATGCGATGGGTTCCCCACAAAATATAGCATTTGATTTCTTCACTGGTTCCAAGAGCAATGACATGTTTAGCATAATCAGCGAAAGCAGTTACCGGGATAGGCCAACAAGTGATGAAGCTCGCATATCTGGTTTTGGTCTATATCCTCATCAATATCCATATACTATGCCAATGCAACAGTCAAATAATCACGAGGTCTACAGTTTCTCAAATTCCACAGCAACCCCAGGCAATGCCTCAGCCAGTGAACCTTCTTCAGCTGCTGCAGACATCAGAGCAGTCATGCGTAATACAACTGCCGCTGCTGAGACCGTTCCTCCCCTATTTATTGACTTTCTTGGAGTTGGAGCCGGATGA 1263 0.4561 MSSLSLSSNYGKVSTVSSSQESSYAGRSSSEMMDNGGYNWTFPFMRDCLIARNSEEHHSSDDKGSDSSAGVGEESEDFNHNVNLVDRTCNDKLVNGKETDSGQSKLCARGHWRPAEDAKLKELVSLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEDEEERLMQAHRVYGNKWAVIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRKPSQTVYRRMEDNPLFPDAARRTAPSPYFLGAFSNGGFSSTSSRYPYGSFNGHLGGVDFASNSKPHLSGGREANSSCEAPPQNAMGSPQNIAFDFFTGSKSNDMFSIISESSYRDRPTSDEARISGFGLYPHQYPYTMPMQQSNNHEVYSFSNSTATPGNASASEPSSAAADIRAVMRNTTAAAETVPPLFIDFLGVGAG* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00416 420 MobiDBLite consensus disorder prediction 55 70 - -
Pte11g00416 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 155 IPR017930 -
Pte11g00416 420 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
Pte11g00416 420 PANTHER MYB PROTEIN-RELATED 109 294 - -
Pte11g00416 420 MobiDBLite consensus disorder prediction 55 77 - -
Pte11g00416 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 210 IPR017930 -
Pte11g00416 420 SMART sant 160 208 IPR001005 -
Pte11g00416 420 SMART sant 108 157 IPR001005 -
Pte11g00416 420 CDD SANT 112 153 IPR001005 -
Pte11g00416 420 ProSiteProfiles Myb-like domain profile. 109 155 IPR001005 -
Pte11g00416 420 MobiDBLite consensus disorder prediction 1 31 - -
Pte11g00416 420 SUPERFAMILY Homeodomain-like 109 202 IPR009057 -
Pte11g00416 420 Pfam Myb-like DNA-binding domain 109 155 IPR001005 -
Pte11g00416 420 Pfam Myb-like DNA-binding domain 161 204 IPR001005 -
Pte11g00416 420 Gene3D - 162 233 - -
Pte11g00416 420 CDD SANT 163 203 IPR001005 -
Pte11g00416 420 Gene3D - 109 160 - -
Pte11g00416 420 FunFam MYB transcription factor 109 160 - -
Pte11g00416 420 FunFam MYB transcription factor 162 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00416 Pte-Chr11 4161379 4163196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00416 48 238 MYB Transcription Factor Family AT1G69560 59.903 2.03e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte11g00416 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00416 K09422 - vvi:100253313 458.759