Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00412 ATGGATGAACGGAATATTGATCATGATCATGAGAAACTGGACGAGGTCATGCTACCGGGGTTTAGGTTTCATCCAACGGACGAGGAGCTTGTTGGCTTTTATCTCAAGAGAAAGATCCAGCAACGACCTCTATCTATTGAGCTCATCAGGCAGCTAGATATCTACAAATATGATCCATGGGATCTTCCAAAGTTGGCGACAACTGGAGAGAAAGAATGGTACTTCTACTGCCCTAGGGATAGAAAATACAGAAACAGTGCACGGCCTAACCGAGTCACTGGAGCTGGGTTTTGGAAAGCCACCGGAACTGACAGGCCTATTTACTCTTCAGAAGGTTCAAAGTGCATTGGATTGAAGAAGTCCCTTGTTTTCTACAAAGGTAGAGCTGCCAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTCCGACTTCCTTCCCTCGCAGATCACTCATCACCCAACAAGTTTATGGACAAAAACTTAGCAGCAAATGATTCATGGGCCATATGCAGAATATTCAAGAAAACTAATTCTAGTGCACAAAGGGCATTATCTCACTCCTGGGTGTCTCCCCTTCCTGAAACCAACAAATCTCATGTTCTGACCAGAGATCATGATACGGGCAATGCTCAGTTTTATCCAGAGAGTATGCCACAACTGACAAACAAAGCCTGTTCACTCTTTCAGTTTTATGGTAGCAATAATAACAATTATATACAACAGTCAATGAGTAACAGCATTCCTCCTCTAGATGTTGCCTCTTATAAACCAGTAATAAACTCACTGGTCTACAAGCCTATTGACCAAACCCCTCTTTCAAACCCTGGAGATTTTACCACTGGCTTTCTTTTCCCTTCGCCTCTTGAAACATCAACATGCTCCAACTCTAAATCCACCATGGATGTTTCTTCTCTGCTTCTAAATATGTCATCCTCAGTGCTTGGAGATTTTGGCAAGACTTCCAGCTCTGAGAGTAATTTTGGTAGATCGCATGGCCAATACAACAATGGTTTTCCTAGCTCTTTGCGAATGCATGAGATTCAAGGTTCTATTGAAAACAATGGAGATGGTGACAGTGAATTGATAAAGGGTAATCCAAATTCGAATGTGCATCACACAGATGATGATCAGCTGGAATTAATGGTCAGATCCAACACTGGCTACTGGCCTTTGAATGTTGGAGATGCATGGAAGTCAAATTTGATTTGGGAAGCTTCCTCTTGTCCCAGTGAAATGTCCTCATCAAGTTATCCAGTAACCAAATGCTACACTTAA 1275 0.4227 MDERNIDHDHEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIRQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLADHSSPNKFMDKNLAANDSWAICRIFKKTNSSAQRALSHSWVSPLPETNKSHVLTRDHDTGNAQFYPESMPQLTNKACSLFQFYGSNNNNYIQQSMSNSIPPLDVASYKPVINSLVYKPIDQTPLSNPGDFTTGFLFPSPLETSTCSNSKSTMDVSSLLLNMSSSVLGDFGKTSSSESNFGRSHGQYNNGFPSSLRMHEIQGSIENNGDGDSELIKGNPNSNVHHTDDDQLELMVRSNTGYWPLNVGDAWKSNLIWEASSCPSEMSSSSYPVTKCYT* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00412 424 Gene3D NAC domain 26 180 IPR036093 GO:0003677|GO:0006355
Pte11g00412 424 MobiDBLite consensus disorder prediction 349 368 - -
Pte11g00412 424 Pfam No apical meristem (NAM) protein 19 144 IPR003441 GO:0003677|GO:0006355
Pte11g00412 424 ProSiteProfiles NAC domain profile. 17 175 IPR003441 GO:0003677|GO:0006355
Pte11g00412 424 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 254 - -
Pte11g00412 424 SUPERFAMILY NAC domain 16 175 IPR036093 GO:0003677|GO:0006355
Pte11g00412 424 MobiDBLite consensus disorder prediction 349 373 - -
Pte11g00412 424 FunFam NAC domain-containing protein 35 26 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00412 Pte-Chr11 4128953 4130514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00412 1 317 NAC Transcription Factor Family AT1G26870 58.610 6.38e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte11g00412 NAM 6.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00412 - - qsa:O6P43_025458 520.005