Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00403 ATGATCATGGAAGCAGATCATCAAAATGGGATCCGCAGGCCAAATTTTCCATTGCAGTTGTTGGAAAAAAGAGAAGAAGTTGCTGCAAGCTCCAGTGCTAGTTTAAGCTACAACGCTTTGTCTATTCCTGGTAGTACTGATGTTGGACAGACAAGCACAAACCCCAGCAGACAAAATTCATGCCTTCAAGTCTCTGAGCAACCCAAAAAGCCACCGCCTAAGAGGACTTCAACCAAAGACAGGCACACCAAAGTCGACGGCCGTGGCCGCCGGATCAGAATGCCTGCTGCTTGTGCTGCTAGAGTTTTTCAATTGACCAGAGAGCTTGGCCATAAGTCCGACGGTGAAACTATAGAGTGGCTCCTCCAACAGGCGGAGCCAGCTGTAATTGCAGCCACAGGTACCGGCACTATTCCCGCAAATTTCACTTCTCTCAACATCTCTCTTCGCAGCTCTGGTTCCACTATGTCAGCTCCCTCGCAATACTTTAGAAGCAATTACTTGAATCCCAGCTTTTCAACTATGGCTCAGTTGAGGGCTCGGACTGGTACCACTTGTGGTTCTGATCAGTGGGAGAGAAACTTAAACATGGTTATGGATGAGTCTCGCAGGATTTTGTTTCCTGGGATTGTAGGGTTGTCATCATCGACTGATCAGAATTCAACAATGTCTACCGACTTAAATTTTAATCCTGGAGGTAATGTGAATGCCATTTTGCAAGCAAAGCAAGAACTTCGTGAAGAAGCTGCAGCTGGCAGTGGGGTAGGGCTAGATTTGGCGTCGGATTCTCATGAGGCCAACAGTATTGGAAGGAAAAGGAGGCCGGAGCAAGAGTTGTCGCAAAACCAGATAGGAAACTATTTGTTACAGTCCAGTTCAGGTTCAATTCCAGCTAGTCACAATTCAACTCCAGCACCATTCTGGATGGTAGCAAATAATCCAAATAGCCAAGTTATGGAAAGTGGTGGTGGTAGAGGCGGCGGAGGCGGTGGTGACTCCATTTGGGCAGTTCCTTCTATGAACACTAGTACTATGTACCGAGGGCCTATTCCTGGAGGGATTCACTTCATGAACTTTGCTTCTCCAATGCCTTTAGTGGCAGGACAGCAATTCAGTACCGGAATAGGAGGAGGAAGTGGTGGCGCAGTGGTAAGCGACAGTCATTACGGCATGCTTGCGGCCCATAATGCATACAGACAGCTTCCAGCGAATAGTCACGTCTCTGAGTCCCCGGGAAGCACTGGTGCACAGCAGCCTTATCCTGGAGGTGGTGAGAGACATGAAACAAGCAGTCATCACCATTCCTAA 1308 0.4817 MIMEADHQNGIRRPNFPLQLLEKREEVAASSSASLSYNALSIPGSTDVGQTSTNPSRQNSCLQVSEQPKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSQYFRSNYLNPSFSTMAQLRARTGTTCGSDQWERNLNMVMDESRRILFPGIVGLSSSTDQNSTMSTDLNFNPGGNVNAILQAKQELREEAAAGSGVGLDLASDSHEANSIGRKRRPEQELSQNQIGNYLLQSSSGSIPASHNSTPAPFWMVANNPNSQVMESGGGRGGGGGGDSIWAVPSMNTSTMYRGPIPGGIHFMNFASPMPLVAGQQFSTGIGGGSGGAVVSDSHYGMLAAHNAYRQLPANSHVSESPGSTGAQQPYPGGGERHETSSHHHS* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00403 435 MobiDBLite consensus disorder prediction 257 280 - -
Pte11g00403 435 MobiDBLite consensus disorder prediction 72 90 - -
Pte11g00403 435 MobiDBLite consensus disorder prediction 39 90 - -
Pte11g00403 435 Pfam TCP family transcription factor 76 282 IPR017887 -
Pte11g00403 435 MobiDBLite consensus disorder prediction 404 435 - -
Pte11g00403 435 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 36 412 IPR005333 GO:0003700
Pte11g00403 435 MobiDBLite consensus disorder prediction 39 66 - -
Pte11g00403 435 ProSiteProfiles TCP domain profile. 78 132 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00403 Pte-Chr11 4082418 4084400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00403 58 370 TCP Transcription Factor Family AT3G47620 45.125 1.67e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pte11g00403 TCP 3.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00403 - - qsa:O6P43_025447 498.434