Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00401 ATGTCTAGCAGAAGATCCCGCTCTAGACAAACTGGTGCTTCCAGTGGTATCACTGAAGCTCAGATCAACGATCTCGTCTCCAAGTTACAGCAAGTTATTCCTGAGCTTCGTCGAAGAAGGTCCGACAAGGTTTCTGCTTCCAAGGTTCTGCAGGAGACTTGCAACTACATCAAAAACTTGCACAGAGAAGTTGATGACCTAAGTGATCGGTTGTCAGAGCTTCTTTCAACTACAGACACCAACAGCGTTGAAGCAGACATCATTAGGAGCTTACTTTTGTAG 282 0.4539 MSSRRSRSRQTGASSGITEAQINDLVSKLQQVIPELRRRRSDKVSASKVLQETCNYIKNLHREVDDLSDRLSELLSTTDTNSVEADIIRSLLL* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00401 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Pte11g00401 93 CDD bHLH_AtPRE_like 13 77 - -
Pte11g00401 93 Coils Coil 57 77 - -
Pte11g00401 93 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Pte11g00401 93 Gene3D - 4 89 IPR036638 GO:0046983
Pte11g00401 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 78 IPR036638 GO:0046983
Pte11g00401 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Pte11g00401 93 FunFam Transcription factor ILI6 7 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00401 Pte-Chr11 4049480 4050176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00401 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 67.021 2.04e-34 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte11g00401 HLH 3.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00401 - - gmx:100804830 139.813