Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00398 ATGGCAAGCAACGAAATGGCTTTCTTCCCTGCAAATTTTATTCTACAGACCCCTCACCACCACGACACTCATGAACCTCCCAATTCTCTCAACGCAATTCTACCTTCCTGCTCGCCTCAAGACTTTCATGGAGCGGCATCTTTTCTGGGGAAGAGATCTATGTCATTCCCTGGCATTGAATTGGGTGAAGAAACTAATGCAGAAGACGATTTTTCCGACGACGGGTCACAGGCAGGGGAGAAGAAGAGAAGACTGAACATTGAGCAAGTGAAGACACTTGAGAAGAACTTCGAGTTGGGTAACAAGCTTGAACCAGAGAGGAAAATGCAGCTGGCAAGAGCTCTCGGTCTACAGCCTAGACAAATTGCTATTTGGTTCCAGAACAGGAGAGCCAGGTGGAAGACAAAACAGTTGGAGAAGGACTATGATCATCTCAAAAGACAGTTTGAAGCCATCAAAACTGAAAATGAAGCACTTCAAGCTCAGAACGAAAAGCTTCATGCTGAGATATTGGCGCTAAAAAGTAGAGAACCAATTGAAGGTATCAACCTCAATAAGGAGACAGAAGGCTCAAGCAGCAATAGAAGCGAGAATAGTTCTGAAATCAAATTGGATATCTCACGGACACCTGCTATTGAAAACAAGTCTACTCACCCAACCAGTAGATCTTTCTTCCCAACAACCATGAGACCTACTGGTTTGGCACAGCTTTTCCAGACTTCACCAAGGCCAGAACTCCAAGGCCAAAAGATGGATCAAATTGTGAAAGAAGAAAGCTTAAGCAACATTTTTTGCAATATGGATGACCAGTCTGGACTTTGGCCATGGTTGGAGCAGCAACAGTTCAATTGA 852 0.4425 MASNEMAFFPANFILQTPHHHDTHEPPNSLNAILPSCSPQDFHGAASFLGKRSMSFPGIELGEETNAEDDFSDDGSQAGEKKRRLNIEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDHLKRQFEAIKTENEALQAQNEKLHAEILALKSREPIEGINLNKETEGSSSNRSENSSEIKLDISRTPAIENKSTHPTSRSFFPTTMRPTGLAQLFQTSPRPELQGQKMDQIVKEESLSNIFCNMDDQSGLWPWLEQQQFN* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00398 283 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Pte11g00398 283 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Pte11g00398 283 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Pte11g00398 283 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Pte11g00398 283 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Pte11g00398 283 MobiDBLite consensus disorder prediction 182 206 - -
Pte11g00398 283 MobiDBLite consensus disorder prediction 185 206 - -
Pte11g00398 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 67 222 IPR045224 GO:0003700
Pte11g00398 283 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Pte11g00398 283 Coils Coil 128 176 - -
Pte11g00398 283 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Pte11g00398 283 Gene3D - 73 142 - -
Pte11g00398 283 CDD homeodomain 81 137 IPR001356 GO:0003677
Pte11g00398 283 SUPERFAMILY Homeodomain-like 72 138 IPR009057 -
Pte11g00398 283 SMART HOX_1 79 140 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00398 Pte-Chr11 4022286 4024705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00398 2 284 Homeobox Transcription Factor Family AT1G69780 62.126 4.15e-116 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte11g00398 Homeodomain 5.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00398 K09338 - qsa:O6P43_025435 467.618