Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00397 ATGCAGGGGATGAAGAAGACCAAGCCGCAGCAATGTAATATAGATTGCAAGAAGAAGGAGCGTCATATTGTCACATGGTCTCAAGAGGAGGATGATATTCTCAGAGAGCAGATAAGCATTCATGGCACTGAAAACTGGGCCATTATTGCATCTAAATTCAAGGACAAGACGACTAGACAGTGTAGAAGAAGATGGTACACCTACTTAAATTCTGATTTCAAGAAGGGGGGATGGTCACCTGAAGAAGACTTGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGATGGACAGAAATAGCTAAGGTGGTTTCAGGAAGAACGGATAATGCTGTGAAAAATCGATTCACCACTTTGTGCAAAAAGAGGGCAAAATATGAAGCACTGGCAAAAGAAAACTCATCCTCTAGCAAAAATTCAAACAACAAAAAGTTCAACTTCCAAAGTGATTTTGGTGTAGATGGAATATCATTGATTGAACCACGTAGAAAGAGATTAAGGTACAATGACACTCAAACATCAGATTCTCAAGTTAAAATTGGTGCCATCGTCGATGAAGTTGTGCCACTGCAATCCAGGAGGACACATATCTCTGGAATCACAGAAGCACGTAAGCAATGCGAACCCACAATTCATCAGCAGTCTAGAGCACCTTTCACAGTGTCAGCTCATAATGTCCACAATCTCAACAATTTGTCTGTTCAGCAGAATCATGTCGAAGCAAAGGTCATCAATGGAGAAGACCTTGAGTTCGATTTTTTTTCCCCCAACTTTATTTCAAATCCTTCTGCAGTCCAGCATAACAAGATTCAAGGAGCATTTCTGAAAAAGGATGATCCAAAGATCAGTGCTTTGATGCAGCAAGCAGAACTACTAGCTTCACTTGCTCAAAAAGTCAACGCGGAAAATACAGACCAGAGTCTAGAAAATGCTTGGAAGGTTCTTCAAGAGTTTTTGAACGAAAGCAAAGAAACAGACACCGCCAAGTGTAAAATCACCGAAATACATCTCGATGATCTTAAAGACATTGTAGAAGATCTAAAGAGCGGTAATGACGGAAGCGTATTTTCTTGGAGGCAACCTGATCAATACGAGAACTCTCCAGGAAGTTCAGAATACAGCATAGGATCAGCTGTGCTGCCCCAATCTGCCGCCGATCAATTACAACATTCACTGCATCAATATATTGAAACTGATATAAAAACTCCTGAAATTGAAGAGCAGAAGAGGCCTGAAGAATGTGAGAAGGGGAATCTTTCTGGCGAAAACACGCATCAAGGAACGGGCATCTTCTCTTCCTTCTCTTCCTTTGAAGACAAAGTAGACATTGAGGATGCCCTATCTACCACATTAAGTGCCGAATTCAGTTCCCCTCTCCAAGTTACCCCTCTTTTCAGGTCCTTGGCAGCAGGAATTCCCAGCCCGATGTTCTCCGAAAGTGAGCGGAACTTTCTAATGAGAACGCTTGGAATAGAGTCTCCGTCCCCAAATCCAAGGAATAACTCTTCACAACCACCACCATGCAAAAGAGCCCTCCTACAAAGCCTTTGA 1551 0.4204 MQGMKKTKPQQCNIDCKKKERHIVTWSQEEDDILREQISIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDLLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKYEALAKENSSSSKNSNNKKFNFQSDFGVDGISLIEPRRKRLRYNDTQTSDSQVKIGAIVDEVVPLQSRRTHISGITEARKQCEPTIHQQSRAPFTVSAHNVHNLNNLSVQQNHVEAKVINGEDLEFDFFSPNFISNPSAVQHNKIQGAFLKKDDPKISALMQQAELLASLAQKVNAENTDQSLENAWKVLQEFLNESKETDTAKCKITEIHLDDLKDIVEDLKSGNDGSVFSWRQPDQYENSPGSSEYSIGSAVLPQSAADQLQHSLHQYIETDIKTPEIEEQKRPEECEKGNLSGENTHQGTGIFSSFSSFEDKVDIEDALSTTLSAEFSSPLQVTPLFRSLAAGIPSPMFSESERNFLMRTLGIESPSPNPRNNSSQPPPCKRALLQSL* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00397 516 CDD SANT 78 119 IPR001005 -
Pte11g00397 516 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Pte11g00397 516 FunFam Transcription factor MYB124 18 74 - -
Pte11g00397 516 Pfam Myb-like DNA-binding domain 26 85 - -
Pte11g00397 516 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Pte11g00397 516 MobiDBLite consensus disorder prediction 400 431 - -
Pte11g00397 516 SUPERFAMILY Homeodomain-like 22 116 IPR009057 -
Pte11g00397 516 MobiDBLite consensus disorder prediction 353 375 - -
Pte11g00397 516 MobiDBLite consensus disorder prediction 400 419 - -
Pte11g00397 516 CDD SANT 25 69 IPR001005 -
Pte11g00397 516 Gene3D - 77 149 - -
Pte11g00397 516 MobiDBLite consensus disorder prediction 493 516 - -
Pte11g00397 516 Gene3D - 13 74 - -
Pte11g00397 516 MobiDBLite consensus disorder prediction 352 375 - -
Pte11g00397 516 ProSiteProfiles Myb-like domain profile. 26 69 IPR001005 -
Pte11g00397 516 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 69 IPR017930 -
Pte11g00397 516 SMART sant 74 122 IPR001005 -
Pte11g00397 516 SMART sant 22 71 IPR001005 -
Pte11g00397 516 MobiDBLite consensus disorder prediction 488 516 - -
Pte11g00397 516 PANTHER MYB PROTEIN-RELATED 25 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00397 Pte-Chr11 4002290 4009258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00397 64 517 MYB Transcription Factor Family AT1G14350 46.983 2.30e-126 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte11g00397 Myb_DNA-bind_6 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00397 K09422 - qsa:O6P43_033044 558.525