Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00393 ATGATACGGTCGCACTTGCTATCTTCTTCGACTACCCCTTCCTCGTCTTCCTCTCCACTAACTTCACAATTTCGCTCTGGGAATTCGAAGCTCCAATCTTTCTCATCTTTGAGCTTCACATGTAAATTCACCCCTAGTTTTCTGACACTAACCTCCTTAACAAAAAATCACCTCTCTGTCAAATGTGCTCGTTCTGAGTACCTTGACCAACAAAGGTTCGCTACTTCTGAAGACTCTTCCTATGCACTGCGCTCTCCTTCACTCGTACCTCGATCTGTAGTTCGAGATGGAGCTTCGCCACGCAGGGTTTTTGTTGGGCACTCCATATACAAAGGGAAGGCAGCGCTGACAGTGAATCCTAGACCTCCAGAATTTGTGGCTTTGGAGTCAGGGGCTTATAAGGTGTCCAAGGACGGCTATGTTCTGCTTCAGTTTGCTCCTGCGATTGGAGTGCGACAGTACGATTGGACCAGAAAGCAGGTATTTTCTCTCTCTGTGCCTGAAATGGGAAATCTAATTTGCCTTGGTATGAGGGAGTCACGTGAATTCTTTCATGATCCATTTAAGGGTAACAGTGATGAAGGTAAGGTCAGGAAGGTGCTGAAGGTGGAGCCTCTTCCTGATGGTTCTGGGCACTTCTTCAACCTCAATGTTCAAAACAAGCTAGCGAACGTAGACGAGAGTATTTATATCCCTATTACGAGGGCAGAGTTTGCTGTTTTCAACTCTCTGTTCAATTATATCATCCCCTACCTCTTAGGGTGGCACTCTTTTGCTAACAGCATAGGACCAGATGGAGCCAGCCGTGCGAACAATGGCAATCCAAGATATGGTGGAGACTTCGAGTGGAGCAGATAG 858 0.4662 MIRSHLLSSSTTPSSSSSPLTSQFRSGNSKLQSFSSLSFTCKFTPSFLTLTSLTKNHLSVKCARSEYLDQQRFATSEDSSYALRSPSLVPRSVVRDGASPRRVFVGHSIYKGKAALTVNPRPPEFVALESGAYKVSKDGYVLLQFAPAIGVRQYDWTRKQVFSLSVPEMGNLICLGMRESREFFHDPFKGNSDEGKVRKVLKVEPLPDGSGHFFNLNVQNKLANVDESIYIPITRAEFAVFNSLFNYIIPYLLGWHSFANSIGPDGASRANNGNPRYGGDFEWSR* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00393 285 Gene3D Transcriptional Coactivator Pc4; Chain A 93 264 IPR009044 GO:0003677|GO:0006355
Pte11g00393 285 MobiDBLite consensus disorder prediction 1 23 - -
Pte11g00393 285 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 44 285 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pte11g00393 285 SUPERFAMILY ssDNA-binding transcriptional regulator domain 102 285 IPR009044 GO:0003677|GO:0006355
Pte11g00393 285 Pfam Whirly transcription factor 109 243 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00393 Pte-Chr11 3978810 3982154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00393 48 286 Whirly Transcription Factor Family AT1G14410 66.527 3.44e-113 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Pte11g00393 Whirly 4.4e-58 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00393 K26559 - cpap:110814306 337.035