LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte11g00391	ATGGAGTCTGCATTGAGTGCGCACGATTATGACTTGTGTCTGAAGGAAACTGACCAGGCTATGGCTAATAAGTCTGTCAAGAGGCGGCGAAGAGAGTCATCCATTGCAGTCTTAGAATCTCATGATCAGAAAGGTGAACAAGCACAGCAGCTGGCACAACCACAGACAAACCAAGCTAATACAAACCCCGCCACAACTGTGAAGAGAAGCTCAAGATTCCGTGGGGTTAGCAGGCATGATTTGAACTATTTCCTCCGTCCTAGTTTCTTCTCTGTCTTTTGGTTGTATGAAGCTCATCTATGGGATAAAGGGTCCTGGAATCCGACACAGAAGAAGAAAGGAAAGCAAGGTGCTTATGATGAGGAAGAAGCTGCAGCTAGGGCATATGATTTGGCAGCACTTAAATATTGGGGAACAGCAACTTTCACAAACTTTCCTGTATCTGAATATGAGAAAGAGATTGAGATAATGAAAACGGTAACCAAAGAAGAATATCTAGCCTCTTTAAGAAGAAGAAGCAGTGGCTTTTCCAGAGGTGTATCCAAGTATAGGGGAGTAGCCAGGCACCATCACAATGGAAGATGGGAAGCAAGGATCGGTAGAGTATTTGGAAATAAGTACCTCTACCTTGGCACTTACAGTACTCAAGAGGAAGCTGCTCGTGCATATGATATTGCAGCTATAGAATACCGAGGCATCAATGCTGTGACCAATTTTGACTTGAGCACATACATAAGATGGTTAAGGCCAGGCCAAGGTGCCAATTCAGTGGCTTCTCAGGACAAAAAACTAAGCACAGATTCTCCCTCAGACATGACTTCTACTAATCTAAACCCAACTCAACCACTCCAGACAACTCAACTGGCCAACATCCCTGCCACTCGCATTCAATTAGATACTTTGGATTTTATGACAAAGAAACAAGAGGTTTCCCACTTTGCAGCACCAATAAGTCCATGTACCAAGTCATCTTCCCCAACAGCACTTGGACTTCTGCTCAAATCTTCAGTATTTAGAGATCTCATGCAGAAAAATTTGAACACTACAAATGAAGAAGCTGAAGATGAGATTCAAAATGCGCAACTGGCTGACACAAACCCTGACATTGAAAATTTCTTTGGCAATGACATCGGTACCATGTCATTTCTAGGACCTTCCACTGCACACATGCTTCCCAACTTGGAGCCACTGGATTTGGAAGAGAGTAAGCTTTCATTGTTCCATCCTGGCTTTCGGATGCTTCCTTAA	1248	0.4351	MESALSAHDYDLCLKETDQAMANKSVKRRRRESSIAVLESHDQKGEQAQQLAQPQTNQANTNPATTVKRSSRFRGVSRHDLNYFLRPSFFSVFWLYEAHLWDKGSWNPTQKKKGKQGAYDEEEAAARAYDLAALKYWGTATFTNFPVSEYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGQGANSVASQDKKLSTDSPSDMTSTNLNPTQPLQTTQLANIPATRIQLDTLDFMTKKQEVSHFAAPISPCTKSSSPTALGLLLKSSVFRDLMQKNLNTTNEEAEDEIQNAQLADTNPDIENFFGNDIGTMSFLGPSTAHMLPNLEPLDLEESKLSLFHPGFRMLP*	416

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte11g00391	415	Gene3D	AP2/ERF domain	181	242	IPR036955	GO:0003700\|GO:0006355
	Pte11g00391	415	Gene3D	AP2/ERF domain	71	148	IPR036955	GO:0003700\|GO:0006355
	Pte11g00391	415	MobiDBLite	consensus disorder prediction	23	70	-	-
	Pte11g00391	415	ProSiteProfiles	AP2/ERF domain profile.	182	240	IPR001471	GO:0003700\|GO:0006355
	Pte11g00391	415	ProSiteProfiles	AP2/ERF domain profile.	72	146	IPR001471	GO:0003700\|GO:0006355
	Pte11g00391	415	FunFam	AP2-like ethylene-responsive transcription factor	181	242	-	-
	Pte11g00391	415	MobiDBLite	consensus disorder prediction	255	282	-	-
	Pte11g00391	415	SMART	rav1_2	182	246	IPR001471	GO:0003700\|GO:0006355
	Pte11g00391	415	SMART	rav1_2	72	152	IPR001471	GO:0003700\|GO:0006355
	Pte11g00391	415	CDD	AP2	181	242	IPR001471	GO:0003700\|GO:0006355
	Pte11g00391	415	MobiDBLite	consensus disorder prediction	43	70	-	-
	Pte11g00391	415	SUPERFAMILY	DNA-binding domain	103	148	IPR016177	GO:0003677
	Pte11g00391	415	MobiDBLite	consensus disorder prediction	23	39	-	-
	Pte11g00391	415	Pfam	AP2 domain	181	232	IPR001471	GO:0003700\|GO:0006355
	Pte11g00391	415	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	45	311	-	-
	Pte11g00391	415	SUPERFAMILY	DNA-binding domain	181	242	IPR016177	GO:0003677
	Pte11g00391	415	Coils	Coil	339	363	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte11g00391	Pte-Chr11	3973887	3976032	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte11g00391	61	277	AP2-EREBP Transcription Factor Family	AT5G17430	55.022	3.85e-72	233

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pte11g00391		AP2	8.8e-12	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte11g00391	-		-	qsa:O6P43_025420	454.136