Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00389 ATGCCATTGGTGTGCATTTGTTACAAGAAAGAAATTGCATGCAGATTCTTGTCAGACCCACGAGTAATGAACAGAGGGAACCAAACAAGAAGGAGCCTAGCAAAGAGAAAGGGGAAAGGACCGTGCGATGCTTCCAACCCCATTGACAGATGCTGGAGGTGTGACCGTAACTGGGCCAACAACCGCAAGAAGTTGGCAGATTGTGTACAAGGTTTTGGCAGGAGGACCACAGGTGGAAAAGATGGACGTTACTACGTGGTAACTGATCCATCAGATGATGATTTGATCAACCCTACGCCAGGTACCCTTAGGCATGCAGTGATTCAGAGGGAGCCCTTGTGGATCATCTTTGCACACAGCATGATCATTAGGCTCCAACAGGAACTCATGATGTTTAATAACAAGACCATCGATGGGAGGGGAGCTAATGTCCATATTGCTTATGGTGCCGGTATCACCGTTCAGTATATCAACAACGTGATAATCCATGGCCTGCATATCCATGATATTGTACCTAAAAATGGCGGCATGATTAGAGATTCTATTTTTCATTTTGGTGAAAGAAGCAGAAGTGACGGTGATGGTATTTCCATCTATGGCGGCAGCAATATCTGGATTGACCACAATTCCATGTATAATTGCACTGATGGTATCATTGACGCCATCGTCAATTCTACCGCTATTACTATATCTAACAATCATTTCACCAACCACAACGAGGTGATGCTATTTGGTGCAAGTGACACATTCTATGGTGATAAGATTATGCAAATCACTCTTGCATTCAATCACTTCGGTAAAAATTTAACTCAAAGGATGCCAAGAGTCAGATTTGGTTTCGTCCATATTCTCAACAACGATTACACTTTCTGGAAAATGTACGCAGTGGGTGGCAACAGAGGTCCAACGATTATCAGCGAAGGTAACAGATACATGGCATCAGGAGATCCAAAAACCAAACAGGTCACCAAAAGGGATTTCGTGAAAAATGAGGACTCCAGCAACTGGCAATGGAAATCAATCGATGATCAATTTATGAATGGAGCACGCTTCCAACAATCTGGGCCTGAGTATGTCGAGAATCCAATGACAAGACTGCATATGATTCCTCGAACCAAAGGTGTCGCCGTAAGCAGACTCACTCGTAATGCTGGCACCCTCCTCTGCAAAGTTGGCAAACCTTGCTGA 1188 0.4411 MPLVCICYKKEIACRFLSDPRVMNRGNQTRRSLAKRKGKGPCDASNPIDRCWRCDRNWANNRKKLADCVQGFGRRTTGGKDGRYYVVTDPSDDDLINPTPGTLRHAVIQREPLWIIFAHSMIIRLQQELMMFNNKTIDGRGANVHIAYGAGITVQYINNVIIHGLHIHDIVPKNGGMIRDSIFHFGERSRSDGDGISIYGGSNIWIDHNSMYNCTDGIIDAIVNSTAITISNNHFTNHNEVMLFGASDTFYGDKIMQITLAFNHFGKNLTQRMPRVRFGFVHILNNDYTFWKMYAVGGNRGPTIISEGNRYMASGDPKTKQVTKRDFVKNEDSSNWQWKSIDDQFMNGARFQQSGPEYVENPMTRLHMIPRTKGVAVSRLTRNAGTLLCKVGKPC* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00389 395 PRINTS Pollen allergen Amb family signature 128 144 IPR018082 -
Pte11g00389 395 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Pte11g00389 395 PRINTS Pollen allergen Amb family signature 272 291 IPR018082 -
Pte11g00389 395 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
Pte11g00389 395 PRINTS Pollen allergen Amb family signature 366 389 IPR018082 -
Pte11g00389 395 PRINTS Pollen allergen Amb family signature 68 85 IPR018082 -
Pte11g00389 395 PRINTS Pollen allergen Amb family signature 192 213 IPR018082 -
Pte11g00389 395 PRINTS Pollen allergen Amb family signature 92 117 IPR018082 -
Pte11g00389 395 SMART amb_all 120 317 IPR002022 -
Pte11g00389 395 SUPERFAMILY Pectin lyase-like 46 386 IPR011050 -
Pte11g00389 395 Gene3D - 45 388 IPR012334 -
Pte11g00389 395 PANTHER PECTATE LYASE 18-RELATED 22 393 IPR045032 GO:0030570
Pte11g00389 395 Pfam Pectate lyase 131 310 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00389 Pte-Chr11 3951661 3953145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00389 5 396 Polysaccharide Lyase AT3G01270 58.809 7.51e-175 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00389 K01728 - vvi:100254377 522.316