Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00387 ATGAAAGATGATGAAGAGATGGATGATGGAGAAAACCTTCCACCTTGTTCGTACGAAATATTGCAGCTGGAGAAAGAAGAAATTCTTGCAACTCATACTCACTTCTGCACTATATGTGGCAAAGGTTTTAAACGTGATGCTAACGTAAGAATGCACATGAGAGGTCGTGGAGATGAGTACAAAACCCCAGCTGCACTTGCTAAGCCCCATAAAGATTCTAGCTTAGAATCTACTCTTCTTATAAGAGGTGTCACACCAAGAAGTTTTTGGTCATGGCAGATCTTCAGACTCATGAAAAGCATTGCAGTAAGGATAAATGGCTTTGTTCATGTGGTACTACATTCTCAAGGAAGGACAAGCTTTTTGGACACTTTGCTTTGTTCCAAGGGCATACTCCAACCATTCCCTTGGATGAAAACAAAGCGACAGCCTTGCCACCAGAAAGAGAGGATTGCAAAAGAAGCAATAGAAAAGGCTGGAAAGATGAACTTCAGTTTCGGATCACCATCTGCAGGAGATGCTCAGGGCATCGGGAATGTGTCCACGTTGTAA 552 0.4257 MKDDEEMDDGENLPPCSYEILQLEKEEILATHTHFCTICGKGFKRDANVRMHMRGRGDEYKTPAALAKPHKDSSLESTLLIRGVTPRSFWSWQIFRLMKSIAVRINGFVHVVLHSQGRTSFLDTLLCSKGILQPFPWMKTKRQPCHQKERIAKEAIEKAGKMNFSFGSPSAGDAQGIGNVSTL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00387 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 63 IPR013087 -
Pte11g00387 183 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 2 77 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00387 Pte-Chr11 3937663 3938343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00387 1 73 C2H2 Transcription Factor Family AT1G34370 82.192 1.07e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g00387 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00387 - - smil:131010074 143.28