Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00366 ATGAAGAGAAGCAGAGAAGAAGTTTATCTACTGAAGCGGCCTGTGGTGTCTACTCGAGGAGAAAGCTCGGGGCAACCTCAGATGACAGGAGGAGGCAGTCAGAAATTAACAACAAATGATGCCCTGGTCTACCTCAAAGCAGTCAAAGATATGTTTCAAGACAAAAGGGAAAAATATGATGACTTTCTTGAAGTCATGAAAGATTTCAAGGCCCAAAGAATTGATACTGCAGGTGTTATAGCTAGGGTGAAGGAATTGTTTAAAGGGCATCGAGATTTAATTTTAGGGTTTAATACATTCTTACCAAAGGGATATGAGATCACTCTTCCATCAGAAGATGAACAGCCTGCACCAAAGAAGCCTGTGGAGTTTGAAGAAGCTATCAATTTTGTGAACAAAATTAAGGTGCGATTTCAAGGTGATGATCATGTGTACAAATCATTTTTGGACATTTTGAATATGTATAGAAAGGAAAACAAGTCTATTACAGAGGTCTACCAGGAGGTTGCAGCACTTTTCCATGATCACCACGACCTTCTTGTGGAATTCACTCATTTTCTCCCAGATTCTTCAGCAGCAGCCTCCTCACATTATGTCCAATCAGTTCGAAATTCTGTCCTCCGCGATAGGAGCTTCGCCATGCCCACAACACAGCACATGCCTGTTGAAAAAAAAGATAGGACTATGATTTCACATGGAGGACAAGACCCTAGTGTTGATCGTCCTGATCAGGACCATGACAGGACTTTGATGAGAGCAGACAAAGAGCAGCGTCAATGCATTGAAAAGGAAAAGGATCGGAGGGAAGAAAGTGAGAGGAGGGAGTGTGAAAGAGAAGATAAGGATTATGATCATGATGGTAGTCTGGAATTTAAGATGCATTTGCCTAACAAACGTAAATGTCACCTTAGAGCTGATGACTCTGCTGCACAGCAATCATATCCAGGTGGGGATGGTGATAAGAAATTTGGCATGCGTCCTATATCCTCCTCCATTGATGGCAAATGTTCTGTAAAAAGTATATACAGCCAGGAATTTGCATTCTGTGATAAAGTGAAGGAAAAATTGCAAAACCCAGAGGATTACCAAGAATTTTTGAAGTGCCTCCATATTTATAGCAGAGAAATTATCTCCCGAACTGAATTGCAGTCCCTGGTGGGTGATTTGCTGGGGAAGTATCCAGATCTTATGGATGGGTTTAATGAATTTTTGGCACGCTGTGAAAAGAATGATGGATTCCTTGCTGGTGTCATGAGTAAAAAATCCATGTGGAGTGAAGGGTCTCACAAGGTAGTGAAGATTGAGGATAGGGAAAGAGATCGAGATCGAGATGCTGCTGTAAAAGATAGAGATCATGAAGCTCAAGAAAGAGAGAGAGTGGAGAAAAATACTGCTTATCTGAATAAGGATGGCTCTGGCCACAAGATGTCTTTATTTTCCAGTAAGGATAAATACTTGACGAAACCCATACAGGAACTGGACCTATCTAATTGTGAGAGTTGCACTCCCAGTTACCGTCTCCTACCAAAAAATTACCCAATGCCTGTGGCTAGTCAGAGAACTGAACTTGGTGCTGAAGTCCTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAAGATTACTCTTTTAAACACATGCGAAAAAACCAGTACGAAGAGAGCTTGTTTAAATGTGAAGATGACAGGTTTGAGCTTGATATGTTGTTAGAGTCTGTGAATGTGACAACTAAGCGAGTTGAAGACTTGGTAGAGAAGACCAACAACAACACAATTAAAGCAGACACCTACATCCGCATTGAGGAGCACTTCACAGCTCTGAATCTTAGGTGCATTGAGCGGTTATATGGTGACCATGGTCTTGATGTAATGGATGTGTTGAAAAAGAATGCACATCTTGCATTGCCAGTTATATTAACTCGTTTGAAGCAGAAGCAAGAAGAGTGGGCTAGATGTCGTTCAGATTTTAATAAAGTTTGGGCTGAAATATATGCTAAAAACTATCACAAATCCCTTGACCATCGTAGTTTCTATTTCAAGCAGCAAGATGCCAAGAACTTGAGCGCAAAAGCCTTGTTAGCAGAAATTAAAGAAATTAGTGAAAAGAAGCAGAAGGAAGATGACGTGCTTCTTGCCATAGCTGCTGGAAATACACAACCTATTATTCCAAATTTGGAATTTGCCTATCCTGATCCTGACGTTCATGAAGATTTATATCAGCTCATCAAATATTCATGTGGGGAAGTTTGTACTCCAGAACAGCTGGATAAAGTCATGAAAATTTGGACAACCTTCCTGGAACACGTGCTTGGTGTACCTCCTCGACCTCAGGGTGTAGAGGATACTGAAGATGTTGTAGAGGCCAAGAGTGGTTCTGTCAAAAGTGTTGCAGAAAGTGATGATAGTCCTGGCAGGGATGCTGTGGTCTCGAATACTAAGGAATCTAATCGTTCTAGAAGCGGAGAAGTTGTTCCTCCAGAACAATCAAGTTCTAGCAGGGCTTGGCAAACAAATGGGGACAGCAGAGTTAAAGAAGATAGTGGCCTGGACAGTAGTTGCCGCAGGAGTGAAACTGTATCCAGCAGTGCACAACCTGGTAAAGTAGAAACTAATGCTTCTTCCAGTGATAAATTGTCAGGATTTGACAAGCAAGAACATTCTAGTGAGCAGTTTGTCAATGGCAATGCATCATTGGCTACTGGATTGGAGCAAAGCTATGGAAGAACTAAAACAGATAATGTATCAGGGCTTCACTCTTCTCCATCTAGAGCTTGTATTGACACTGTTCAGGGTGCACTTGATTTACCTTCATTGGAGGGCGGTGATTCTATGAGACCATCGACATGTAGGATGAAGTCCGAAGCCGTCCAAATTCATAGACACCCAAGTGAGAGAGAAGAGGGTGAATTATCTCCTAATGGAGATTTTGAGGAAGACAATTTTGCAGTATACGGGAATGGTGGTTTGGAGACTCTATATAAAGTGAAGGAGGCCAGCACCACTCAGCAGAATCCAAGCCATCAGAGGGACGAAGGTTGCTGTGTTGAGGCAAGAGGAGAAAATTATGCTGATGCAGATGATGAAGGTGAAGAAAGTGCTCAAAGATCATCTGAGGGCAGTGAGAATGCTTCTGAGAATGGTGAAGTATCAGGAAGTGAGTCTGCTGATGGCGAAGACTGTTCCAGGGAGGAGCATGAAGAGGACGGAGACCATGAGGTAAATGACAACAAGGCTGAGAGTGAAGGCGAAGCGGAAGGGATGTCTGATGCGCATGATGTTGAAAGGGATGGCACACTATTGTGTTATTCAGAGCACTTTCTTCTCAATGTTAAGCCTCTGGCTAAGCATGTCCCCACAGTATTACATGAGAAAGAGAAGAATTCACGGGTCTTTTATGGAAACGACTCTTTCTACGTGCTTTTTAGGCTTCATCAGACATTATATGAAAGAATACAATCTGCTAAAGTGAACTCGTCACTTAGTGAAAGGAAGTGGAGGACTTCAAATGATGCCAACTCCACTGATCTCTATGCGAGATTCATGGGTGCACTTTACAATTTACTTGATGGATCATCTGACAATATTAAGTTTGAGGATGATTGTCGCGCTATTATTGGGACTCAATCATATGTCTTATTCACATTGGACAAGTTGATATTTAAAATTGTTAAACAGCTTCAATCGGTTGCCTCTGATGAGATGGACAACAAGCTTCTCCAACTTCATTCTTATGAAAAATCCAGGAAAGCTGGAAGATTTTTTGACTTAGTTTATCATGAAAATGCCCGTGTGCTTCTTCATGATGAGAATATATATCGCATTGAATGTTCATCATCACCTGCCCGATTGTCTATTCAGCTTATGGATTATGGACATGATAAGCCAGAAGTTACTGCAGTGTCTATGGACCCTAGTTTTTCATCTTATCTGCATAATGAATTCCTGTCAATTGTTCCTGAGAAAAAGGAGAAGTCTGGGATTTTCTTGAAAAGGAACAAACGTAAATATACTTGTGGAGATAAAGTATCAAGCAAGGCCATGGAAGGAATACAAGTTTTGAATGGTCTGGAGTGCAAAATTGCTTGTAGTTCTTCGAAGGTTTCTTATGTCTTAGATACAGAAGACTTGTTATTTCGGACAAAAAGGAAAAGCAAAACTTCACTGAGCCGTTCATGCCATGAACTCGCAAAGGCTTCAAATATTTGCTCAAGTAGATTACAGCGGTTCCAGAGAATGTTCTATATCCCATAA 4251 0.4138 MKRSREEVYLLKRPVVSTRGESSGQPQMTGGGSQKLTTNDALVYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQPAPKKPVEFEEAINFVNKIKVRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAALFHDHHDLLVEFTHFLPDSSAAASSHYVQSVRNSVLRDRSFAMPTTQHMPVEKKDRTMISHGGQDPSVDRPDQDHDRTLMRADKEQRQCIEKEKDRREESERRECEREDKDYDHDGSLEFKMHLPNKRKCHLRADDSAAQQSYPGGDGDKKFGMRPISSSIDGKCSVKSIYSQEFAFCDKVKEKLQNPEDYQEFLKCLHIYSREIISRTELQSLVGDLLGKYPDLMDGFNEFLARCEKNDGFLAGVMSKKSMWSEGSHKVVKIEDRERDRDRDAAVKDRDHEAQERERVEKNTAYLNKDGSGHKMSLFSSKDKYLTKPIQELDLSNCESCTPSYRLLPKNYPMPVASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFKCEDDRFELDMLLESVNVTTKRVEDLVEKTNNNTIKADTYIRIEEHFTALNLRCIERLYGDHGLDVMDVLKKNAHLALPVILTRLKQKQEEWARCRSDFNKVWAEIYAKNYHKSLDHRSFYFKQQDAKNLSAKALLAEIKEISEKKQKEDDVLLAIAAGNTQPIIPNLEFAYPDPDVHEDLYQLIKYSCGEVCTPEQLDKVMKIWTTFLEHVLGVPPRPQGVEDTEDVVEAKSGSVKSVAESDDSPGRDAVVSNTKESNRSRSGEVVPPEQSSSSRAWQTNGDSRVKEDSGLDSSCRRSETVSSSAQPGKVETNASSSDKLSGFDKQEHSSEQFVNGNASLATGLEQSYGRTKTDNVSGLHSSPSRACIDTVQGALDLPSLEGGDSMRPSTCRMKSEAVQIHRHPSEREEGELSPNGDFEEDNFAVYGNGGLETLYKVKEASTTQQNPSHQRDEGCCVEARGENYADADDEGEESAQRSSEGSENASENGEVSGSESADGEDCSREEHEEDGDHEVNDNKAESEGEAEGMSDAHDVERDGTLLCYSEHFLLNVKPLAKHVPTVLHEKEKNSRVFYGNDSFYVLFRLHQTLYERIQSAKVNSSLSERKWRTSNDANSTDLYARFMGALYNLLDGSSDNIKFEDDCRAIIGTQSYVLFTLDKLIFKIVKQLQSVASDEMDNKLLQLHSYEKSRKAGRFFDLVYHENARVLLHDENIYRIECSSSPARLSIQLMDYGHDKPEVTAVSMDPSFSSYLHNEFLSIVPEKKEKSGIFLKRNKRKYTCGDKVSSKAMEGIQVLNGLECKIACSSSKVSYVLDTEDLLFRTKRKSKTSLSRSCHELAKASNICSSRLQRFQRMFYIP* 1417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00366 1416 Gene3D Paired amphipathic helix 337 409 IPR036600 GO:0006355
Pte11g00366 1416 MobiDBLite consensus disorder prediction 885 923 - -
Pte11g00366 1416 ProSiteProfiles PAH domain profile. 34 104 IPR003822 GO:0006355
Pte11g00366 1416 SUPERFAMILY PAH2 domain 118 189 IPR036600 GO:0006355
Pte11g00366 1416 FunFam Paired amphipathic helix protein SIN3 336 409 - -
Pte11g00366 1416 MobiDBLite consensus disorder prediction 936 983 - -
Pte11g00366 1416 MobiDBLite consensus disorder prediction 436 458 - -
Pte11g00366 1416 Pfam Paired amphipathic helix repeat 360 404 IPR003822 GO:0006355
Pte11g00366 1416 Pfam Paired amphipathic helix repeat 143 187 IPR003822 GO:0006355
Pte11g00366 1416 Pfam Paired amphipathic helix repeat 57 101 IPR003822 GO:0006355
Pte11g00366 1416 MobiDBLite consensus disorder prediction 805 838 - -
Pte11g00366 1416 Pfam C-terminal domain of Sin3a protein 1131 1377 IPR031693 -
Pte11g00366 1416 ProSiteProfiles PAH domain profile. 338 407 IPR003822 GO:0006355
Pte11g00366 1416 MobiDBLite consensus disorder prediction 1055 1090 - -
Pte11g00366 1416 FunFam Paired amphipathic helix protein Sin3 40 102 - -
Pte11g00366 1416 Gene3D Paired amphipathic helix 119 191 IPR036600 GO:0006355
Pte11g00366 1416 PANTHER SIN3B-RELATED 34 1275 IPR039774 GO:0003714
Pte11g00366 1416 SUPERFAMILY PAH2 domain 33 103 IPR036600 GO:0006355
Pte11g00366 1416 Coils Coil 253 273 - -
Pte11g00366 1416 MobiDBLite consensus disorder prediction 1036 1051 - -
Pte11g00366 1416 MobiDBLite consensus disorder prediction 238 281 - -
Pte11g00366 1416 MobiDBLite consensus disorder prediction 773 923 - -
Pte11g00366 1416 Gene3D Paired amphipathic helix 40 102 IPR036600 GO:0006355
Pte11g00366 1416 MobiDBLite consensus disorder prediction 954 970 - -
Pte11g00366 1416 SMART hdac_interact2seq4b 497 597 IPR013194 -
Pte11g00366 1416 SUPERFAMILY PAH2 domain 342 407 IPR036600 GO:0006355
Pte11g00366 1416 MobiDBLite consensus disorder prediction 1023 1090 - -
Pte11g00366 1416 MobiDBLite consensus disorder prediction 213 281 - -
Pte11g00366 1416 ProSiteProfiles PAH domain profile. 120 190 IPR003822 GO:0006355
Pte11g00366 1416 FunFam Paired amphipathic helix SIN3-like protein 119 190 - -
Pte11g00366 1416 Pfam Sin3 family co-repressor 500 591 IPR013194 -
Pte11g00366 1416 MobiDBLite consensus disorder prediction 853 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00366 Pte-Chr11 3816047 3825152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00366 30 135 WRKY Transcription Factor Family AT4G12020 54.717 1.41e-24 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte11g00366 Sin3a_C 2e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00366 K11644 - cave:132177091 2042.31