Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00360 ATGCTGAAGACGAGGGCATTCAAAGGAGCCAATGTGTTCATGTCACGTAACCTTGTGCCGCCGGAGATATTCGATACGCTTCACGAAGCGCTCAAGCTCAATGGTGCACAGATCTTCCTTTGTTGTGACCCCTCACGCAATGGTCCCAACGATTACCATGTCATATCTTCTTTTGATCATGAGAAATTTGAAGATCTTAAAGCTAAGGGTTGTAATTTGCTAGGTCCCCAATGTGTGCTTTCCTGTGCAAAAGAAAATAGACCATTACCTAAACAAGGGTATACTTGTTGCCTTGCTATGGATGGTGTCAAAGTACTTGTATCTGGTTTTGAAATGGACGAGAAGGCTAAGATAGGAAATATTGTATCTGCAATGGGCGGACTGCTGCATACTAAAGCATCATTTGATGTTAATTTTGTTATTGTAAAGAATGTTTTGGCTGCAAAATACAAGTGGGCTTTAAATATTCTGAAGAAACCTATAATCACTATCAATTGGCTGTATCAGTGCTGGAGTGAGCATCGCATTGTTCCTCAAGAGTCATATAAAGTACTTCCTTTTTCTGGACTAGAAATCTGTGTTACAGGAATTCCAGGAGATGAACGCAAAAGGATTGAGAAGCTTATCTCGGAAAATGGTGGAAAATACTCTGCTGAGTTGACGAAGAAGTGCACACATTTGATTTCTCCAGAAGGTGACAAATATAAGGTTGCCAGAAAGTGGGGCCATATCCATACAGTGACACGAAAATGGTTTGATCAATCTATCGGCAAAAGAGCTTGTCTTAACGAGGAGTCATATCCTGTTCAGGGTGGGTCTATGCCTTCATGTAGAACAGTTAGCTTCACATCTCATTATAGCCAAGAAAAAGACATTGGGAGGCTGCAGTCAGCGACATCCTCAGGTGCTGTAGATTGTAGTTTGCCCGCTGGGTCATCTGCTAGGATTGGGGTCCCAGAATCAGATGTCTGCATTTCACAAACAACAACTGCCTTTTCAGATGCTCCTGTATCCAGTCAAGAGTTAAATAATGCAGTACCAGCTATTCAGCCTAAAGATAACTCAAATTTGGAGGGTACTGTTGCCAAAGATTCTGAATCTGATAATGACAATGACCTGTACTTATCGGAGTGCAGAATATTACTCATAGGCTTTGAAGCTTCTGAAATGCGTAGACTGGTTAATATGGTCCGCAGGGGTGGAGGCTGCCGTTATATGTATTTAAATGATAGACTGACACACATTGTGATTGGAACCCCTTCTGAGATGGAAAAGAAAGACATAAGGAGTTTAGCGGCTTTAGGTATTATTTCAGTTGTTAGAACCACGTGGCTTGAAGATTGTGACCTTCAAAAGAAAGAAATGCCTGTTCTTAGTAGACATGTTGCCTCTGACCTGCTTCTTCCAAAAGAGTCGTTAATTTCCACGAGAGGAACAACAACTGCTACAAATCCTGGTAAAAACACAATGTTTAACCAATGTCTTGCAGCTGATCGGTTGCTGCAAAATATGAACCAGAAGAATGGAACTTTGTCTTGCTTGGAGAAAAAAACAGAGAGACAAGCAATGGATGAGAATCGACACATCTTTCTTAAAAAAAATGAGAGGATGTCACAGCAAAGTCAAGTTCCTGTAATTGAAAACAAAATCAAGGGGCAAGAAAATATGCAAAACAATTCCATTGTTCAAAATTTGAAGTCATCTACTGTATTCAAAGGACGAATATTTTGCTTTTCTAGTTCCTTCCCTGAAGAGAGGAGAGCTGAAATTGTTCAATGGGTTAAACAAGGGGGAGGTGAGCTGGTGGATGCCATTGGCAGTCAGAATGTCCACTTCATCATTGAGTGTCATAGTGTCAGACAAAGCTCAGCTGATGTAAGTCCAGCTACTTGTGTTTCTAGCCATTGGATACGTTCTTGCTTGGAGGATGGGTCTTTACTGAATGTGGACAGTCACGTTCTTTATTCTCCACTTTCCTGCAATGTTCCCTTACCTGGGTTTGAAAACTTGCGGTTTTGCGTGTCACAATATGAAGAGAAAGAAAGAGTTCTACTGAGAAACTTGTGTTTCGTTCTTGGAGCCAAATTTGTGGAGAAGCTGAACAAGAAGGTTACACATTTGCTCTGTAAGTTCACTAATGGCCCAAAGTATGAGTTTGCTTGCAAATGGGGGATACAGTGCGTCACATCAGAGTGGATCCTTGAATGTGTGACACAGAATGGGGTTGTTGCTATTGATCAATTTGGACCAAAAGATGTTACATTGCAAGACCAAGATGCTGGACATTGCATTACCACTCAGTTTCACACACAAGCTGTCAGAATGATATGTGAAGATAGTACATCTCAGATGCCAACTCAGTCCCATTATCGGAGAGATTACCGGGACCGAAGTTCCAGAGGCACAATTGACGACGTTAGGGATGGGGCTAACTTAAGTGGTTTCAGCAAAAAAGCGAGAGTTTCGGAGGATCACTGGGAAAATGTTTTGCAAACTTCTGCAGTCCAAAAGGAATATCCTATTGACAATGGCATAAAAGACACGAGAGATGTTTCCAATGCAGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGGAGACAAGTAAGATTAATGAGCAGATCTCGCCAGGAAGGATCGTTTGTGAGAAAAATCTTTTCTCAGCTGATTGTTCGGATACTCGTTCTGTCATTGGGTTACCTGGACATTGGTTAAACAGGTAA 2727 0.4151 MLKTRAFKGANVFMSRNLVPPEIFDTLHEALKLNGAQIFLCCDPSRNGPNDYHVISSFDHEKFEDLKAKGCNLLGPQCVLSCAKENRPLPKQGYTCCLAMDGVKVLVSGFEMDEKAKIGNIVSAMGGLLHTKASFDVNFVIVKNVLAAKYKWALNILKKPIITINWLYQCWSEHRIVPQESYKVLPFSGLEICVTGIPGDERKRIEKLISENGGKYSAELTKKCTHLISPEGDKYKVARKWGHIHTVTRKWFDQSIGKRACLNEESYPVQGGSMPSCRTVSFTSHYSQEKDIGRLQSATSSGAVDCSLPAGSSARIGVPESDVCISQTTTAFSDAPVSSQELNNAVPAIQPKDNSNLEGTVAKDSESDNDNDLYLSECRILLIGFEASEMRRLVNMVRRGGGCRYMYLNDRLTHIVIGTPSEMEKKDIRSLAALGIISVVRTTWLEDCDLQKKEMPVLSRHVASDLLLPKESLISTRGTTTATNPGKNTMFNQCLAADRLLQNMNQKNGTLSCLEKKTERQAMDENRHIFLKKNERMSQQSQVPVIENKIKGQENMQNNSIVQNLKSSTVFKGRIFCFSSSFPEERRAEIVQWVKQGGGELVDAIGSQNVHFIIECHSVRQSSADVSPATCVSSHWIRSCLEDGSLLNVDSHVLYSPLSCNVPLPGFENLRFCVSQYEEKERVLLRNLCFVLGAKFVEKLNKKVTHLLCKFTNGPKYEFACKWGIQCVTSEWILECVTQNGVVAIDQFGPKDVTLQDQDAGHCITTQFHTQAVRMICEDSTSQMPTQSHYRRDYRDRSSRGTIDDVRDGANLSGFSKKARVSEDHWENVLQTSAVQKEYPIDNGIKDTRDVSNAVPDVAAAIEDLLEETSKINEQISPGRIVCEKNLFSADCSDTRSVIGLPGHWLNR* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00360 908 MobiDBLite consensus disorder prediction 789 803 - -
Pte11g00360 908 MobiDBLite consensus disorder prediction 783 803 - -
Pte11g00360 908 Gene3D BRCT domain 661 751 IPR036420 -
Pte11g00360 908 Pfam BRCA1 C Terminus (BRCT) domain 100 171 IPR001357 -
Pte11g00360 908 CDD BRCT 103 170 - -
Pte11g00360 908 ProSiteProfiles BRCT domain profile. 370 462 IPR001357 -
Pte11g00360 908 Gene3D BRCT domain 97 185 IPR036420 -
Pte11g00360 908 MobiDBLite consensus disorder prediction 347 362 - -
Pte11g00360 908 FunFam Transcription coactivator 97 185 - -
Pte11g00360 908 SUPERFAMILY BRCT domain 373 455 IPR036420 -
Pte11g00360 908 ProSiteProfiles BRCT domain profile. 566 654 IPR001357 -
Pte11g00360 908 FunFam DNA topoisomerase II binding protein 1 187 275 - -
Pte11g00360 908 MobiDBLite consensus disorder prediction 347 368 - -
Pte11g00360 908 FunFam Transcription coactivator 351 462 - -
Pte11g00360 908 Gene3D BRCT domain 29 94 IPR036420 -
Pte11g00360 908 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Pte11g00360 908 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 1 889 - -
Pte11g00360 908 SUPERFAMILY BRCT domain 629 750 IPR036420 -
Pte11g00360 908 Pfam twin BRCT domain 190 251 IPR001357 -
Pte11g00360 908 Pfam twin BRCT domain 670 732 IPR001357 -
Pte11g00360 908 CDD BRCT_TopBP1_rpt2_like 665 740 - -
Pte11g00360 908 ProSiteProfiles BRCT domain profile. 182 269 IPR001357 -
Pte11g00360 908 FunFam Transcription coactivator 563 660 - -
Pte11g00360 908 FunFam Transcription coactivator 36 94 - -
Pte11g00360 908 SUPERFAMILY BRCT domain 568 656 IPR036420 -
Pte11g00360 908 SUPERFAMILY BRCT domain 186 269 IPR036420 -
Pte11g00360 908 Coils Coil 497 517 - -
Pte11g00360 908 CDD BRCT_TopBP1_rpt2_like 186 259 - -
Pte11g00360 908 ProSiteProfiles BRCT domain profile. 667 750 IPR001357 -
Pte11g00360 908 SUPERFAMILY BRCT domain 57 183 IPR036420 -
Pte11g00360 908 Gene3D BRCT domain 186 270 IPR036420 -
Pte11g00360 908 Gene3D BRCT domain 352 459 IPR036420 -
Pte11g00360 908 CDD BRCT 575 640 - -
Pte11g00360 908 Gene3D BRCT domain 563 659 IPR036420 -
Pte11g00360 908 Pfam BRCT domain, a BRCA1 C-terminus domain 568 651 IPR001357 -
Pte11g00360 908 SMART BRCT_7 4 86 IPR001357 -
Pte11g00360 908 SMART BRCT_7 664 740 IPR001357 -
Pte11g00360 908 SMART BRCT_7 97 174 IPR001357 -
Pte11g00360 908 SMART BRCT_7 184 259 IPR001357 -
Pte11g00360 908 SMART BRCT_7 568 644 IPR001357 -
Pte11g00360 908 SMART BRCT_7 372 452 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00360 Pte-Chr11 3772362 3779551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00360 1 908 Core DNA Replication Machinery Family AT1G77320 50.619 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00360 K10728 - qsa:O6P43_015132 1158.67