Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00358 ATGAACATTCTTCTTGTGAGTGAAATGGAAAAGGATATCTCTAATCTCTCTCCCTCTCGGGATGGACAAAATAGCCATTCTTCTAGGTCATGCATGGAAAAGAGGCTCAAGCTATTTGGGTTCGAGATTAACCCTACAGAGGAAAGAGAAGACGCGCGTAAAGGGTCTACTGAGGCAGTCGGTGAAGAGAGTGTAAATTCATCAAAATCTTTTTCATCCGGAGGAGAGCAGCCTGACAAGGAGAAGAGTTCACTCATATTGGATAGGAAGTTTGACTGCAAATATTGCTTCAAAGAATTTGCAAATTCACAAGCTTTAGGAGGCCATCAAAATGCTCATAAGAAAGAGAGAATGAAGAAGAAAAGGCTGCAGCTTCAAGCCAGGAAGGCTAGCTTAAATTATTGCCTTCAGCCTTTGCAAAACCATGGGTTCACCATCCATGGTTCTAATTCTACACCATGGTTCTATGATCCTTCTTCATTTAACTCTGAGTTCGCTCTAAATGAAGAATCTCAGATTAGCTTCAGTGCAGCCAGTCTTAATAGCTCTCGTCTCATCTCTAATTTTTATAATTCTCAACAGCCTCATCATCTCTCCTTCGTCCAGCAAGACACAGGCATATTCTCCGCAGCTCATAGTGCTGCCAAGAGAGTTAGTGATAAGAGGCCTTTAGTCTACAAGCCCTCTCCTCTTCCTGCTTCAAAGCATAGACATAGCAAAGCTTTGGACCTTCATTTAGGCCTTAGTATGCAGAGAGATATCTGA 765 0.4222 MNILLVSEMEKDISNLSPSRDGQNSHSSRSCMEKRLKLFGFEINPTEEREDARKGSTEAVGEESVNSSKSFSSGGEQPDKEKSSLILDRKFDCKYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASLNYCLQPLQNHGFTIHGSNSTPWFYDPSSFNSEFALNEESQISFSAASLNSSRLISNFYNSQQPHHLSFVQQDTGIFSAAHSAAKRVSDKRPLVYKPSPLPASKHRHSKALDLHLGLSMQRDI* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00358 254 MobiDBLite consensus disorder prediction 42 82 - -
Pte11g00358 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Pte11g00358 254 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Pte11g00358 254 Gene3D Classic Zinc Finger 61 141 - -
Pte11g00358 254 SUPERFAMILY beta-beta-alpha zinc fingers 88 118 IPR036236 -
Pte11g00358 254 MobiDBLite consensus disorder prediction 42 58 - -
Pte11g00358 254 MobiDBLite consensus disorder prediction 60 79 - -
Pte11g00358 254 PANTHER ZINC FINGER PROTEIN 5 25 251 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00358 Pte-Chr11 3717811 3718755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00358 35 134 C2H2 Transcription Factor Family AT1G68360 46.154 1.66e-16 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g00358 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00358 - - qsa:O6P43_033118 275.404