Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00338 ATGGAGCTTACTCAACATGGTTTCTTCGAGGAACTCCTTGCAGCAGCTCCAAGAGCAGAGAGCTGGAACACTTTCTCCACTGGGTTGAGTGAGGTATTCCCTAGTGGTTGGAGCTTTGATACTTCAGATGAGAACCCAATTTTAGCTGCCCCCAGTACTCCATTTGCTGCATCATTCTCAACTCCAATAGAACATGGCTTCCAATATCCACTGGGCAGTGAAACAGCCTACTCTTACTTTGATGGGTTTACATTGCAAGACATTAATTCATTTTACGCCAGAAATGGCACAACACCGTCTCCAACACAAGAAGATCTAGGAGGTGGTAACCCCTCGATGGCGAATGATGATCGTGAGCTTGGCTTTCTTGGTGATGAAGATCACATTCCCGAAGTAATAAACGGTGGCAGCAAACTTGAAATGGAACGAGCTACTGAGACTGCAGCATTCAATATGAGATTTTGCGTAGAGAAAGAAATCAGAGCGAAGAAGTTGGAAGGACAGCCCTCAAAAAATCTCATGGCAGAAAGAAGGCGAAGGAAACGCCTAAATGACCGCCTTTCCATGCTTCGATCGATAGTCCCTAAGATAAGCAAGATGGACAGGACATCTATTCTTGGAGATACCATTGACTATGTGAAAGAGCTTAAGCAAAGGATCAGTAAGTTGCAAGAAGAACTAGAGGAGGGTGCACATCAAAATCAAATAACCCCATCGATGATTGCCACAGAGATAACGACAAATGAAGCACTGGTCAAAAACTCCCCTAAGTTTGATGTAGAGAAGAGAGAGTTCGATACCCGAATTAGTATTTCTTGTGCACCAAGGCCTGGATTGTTGCTGTCAACAGTGAACATACTCGAAGCATTAGGACTTGAAATTGAGCAATGTGTTATCAGTAGCTTCAGTGATTTTTCAGTGCAAGCATCTTGCTCAGAGGTAGCTGAACAACGGACAACTACTGATGAAGACATAAAGCAAGCATTATTCAGAAATGCAGGTTATGGAGGCAGGTGTCCGTAG 1023 0.4389 MELTQHGFFEELLAAAPRAESWNTFSTGLSEVFPSGWSFDTSDENPILAAPSTPFAASFSTPIEHGFQYPLGSETAYSYFDGFTLQDINSFYARNGTTPSPTQEDLGGGNPSMANDDRELGFLGDEDHIPEVINGGSKLEMERATETAAFNMRFCVEKEIRAKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELKQRISKLQEELEEGAHQNQITPSMIATEITTNEALVKNSPKFDVEKREFDTRISISCAPRPGLLLSTVNILEALGLEIEQCVISSFSDFSVQASCSEVAEQRTTTDEDIKQALFRNAGYGGRCP* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00338 340 Gene3D - 158 234 IPR036638 GO:0046983
Pte11g00338 340 MobiDBLite consensus disorder prediction 94 118 - -
Pte11g00338 340 Pfam Helix-loop-helix DNA-binding domain 173 216 IPR011598 GO:0046983
Pte11g00338 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 139 334 - -
Pte11g00338 340 CDD bHLH_AtAMS_like 170 229 - -
Pte11g00338 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Pte11g00338 340 Coils Coil 206 233 - -
Pte11g00338 340 MobiDBLite consensus disorder prediction 94 109 - -
Pte11g00338 340 SMART finulus 173 222 IPR011598 GO:0046983
Pte11g00338 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 238 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00338 Pte-Chr11 3605827 3607801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00338 163 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 66.854 3.72e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte11g00338 HLH 6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00338 - - cave:132171016 380.563