Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00333 ATGCTCTGTGGCATTGTAAGTTTAAGATTTTCAGTAATTGTTGTGTTAAATATGAAGGAAAGAGAAAAAGCTTTAAGGTCTTTCAAGAGTGGTGCTACTCCTATTTTAGTGGCGACAGATGTAGCTTCAAGAGGTCTGGACATCCCACAAGTAGCCCATGTCATCAACTTTGATTTACCGAAGGACATTGATCACTATGTTCATAGGATTGGCAGAACAGGCCGCGCTGGTAAATCTGGTGTAGCAACTGCCTTCTTCAGTGAGAAAAACTTGCCTCTTGCCAAGCCCCTTGTGGAACTCATGCAGGAAGCTAATCAGGAAGTTCCAGTTTGGCTAAACCAATGTGCTCAGGGGGTATTCAGTTATGGTGTAGACAGTCGTGCACAACGTCATCGTAGAGGTAAGTTTGGACACCATGACTTTCGCGATGACTTTCCATCAAATTTGGGGAGTGATGACTACCAGCATTTTGGAAATGCAGATCCCTCTGTGGATCTTTATTCTCATGGCATTGTAAACGCACTTCCTGTCAGCAGTTTCCACTCCAGCACTTTTGGTGGTTACACTTGTGCTGATTGGAGGGTTGAAGATGGTGGATCGTATGGTAACACTTTCTATTATTACTGA 627 0.4354 MLCGIVSLRFSVIVVLNMKEREKALRSFKSGATPILVATDVASRGLDIPQVAHVINFDLPKDIDHYVHRIGRTGRAGKSGVATAFFSEKNLPLAKPLVELMQEANQEVPVWLNQCAQGVFSYGVDSRAQRHRRGKFGHHDFRDDFPSNLGSDDYQHFGNADPSVDLYSHGIVNALPVSSFHSSTFGGYTCADWRVEDGGSYGNTFYYY* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00333 208 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 116 IPR001650 -
Pte11g00333 208 Pfam Helicase conserved C-terminal domain 16 77 IPR001650 -
Pte11g00333 208 SMART helicmild6 1 77 IPR001650 -
Pte11g00333 208 CDD SF2_C_DEAD 16 86 - -
Pte11g00333 208 Gene3D - 14 119 IPR027417 -
Pte11g00333 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 141 IPR027417 -
Pte11g00333 208 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00333 Pte-Chr11 3526779 3534446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00333 19 110 Eukaryotic Initiation Factors Gene Family AT3G19760 39.130 8.27e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00333 K11594 - qsa:O6P43_023075 208.764