Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00321 ATGGCATCTATTGGCAACCAAAAACCTTGGGTACCATACATGAGCAGCAAAGACTGTTCCCTTGGTTTTTGCACATTATACTGTCCACAATGGTGCTATATAATCTACCCCCCTCCACCCCCTTTTGAATTTCCTAAAGAAAATTCGAGCCCCAATTTCTCTCCCCTTGTAATCGCAGTCATTGGGATTGTGGCCAGTGCTTTTCTCGTTGTTTGTTACTATACTATGATATCAAACTTCTGCGGCGACGTGGACTCGCCGCAGAGACAAAGTCATGATGCAAGCGAGGAACTGGGAGACAATCATAACCCCTCTCTGCATCAGCCATGGCAGGCTGCAACTACTGGCTTAGATGAAGCTCTGATCAAGACCATTACAGTCTGCAAGTACAGGAAAGGTGATGGGCTGGTCCAAGTACCAGATTGCTCTGTTTGTCTCAGTGAGTTTGAAGAAGATGAATACATTAGGCTCTTGCCTAAATGTAGTCACGCTTTTCATCTTCCATGCATCGACACATGGCTCCAATCCCATTCCAGTTGCCCTTTGTGCCGTGCTAATATTTTCTGTTTCAACACTTCATCAATTCAACTGCCTCCACCGGTAATAGAGATTCCTTCAAGGAACGAGGTTTTTTCAGAACGTCAAAATGAAAATGAAGTCTTTTCTGTTAGAAGAGACCATCAAAGGGCTGACCATGAAGAAGTAATGCATCACCGTGTAACCCCAAAGCCTGCATTACGAGTTTTAAGTGATTTAGGGGATTCACATGGAAGAGATACAATTATTGAGATCAGAGATGAAGTCTACGATTCTGTTATTAGAAGGTCCATCTCAATGGATCATTCACTTCAAACTCAAAGCAGTCTCTCAGTTGCTGAAGTTTTGCAACTGAATCATGATGAAGATATCCATGTAGAAGATCAGTGCTCAATTGAGGTTGGATCTTCGAAGAACTCAGTAGGAGAAACTAGCAGGTCTAGATATAAAAGAAAGGTCTTGAACCGTGTACGGAGTCCTATTGTAATGAAGAGATCATTTTCGGGTAGGAGATTTTTGCTCTCTACGCAAGGTAGAGATGAACAGCAGGCTGGTGTCTCTGCCTGA 1104 0.4321 MASIGNQKPWVPYMSSKDCSLGFCTLYCPQWCYIIYPPPPPFEFPKENSSPNFSPLVIAVIGIVASAFLVVCYYTMISNFCGDVDSPQRQSHDASEELGDNHNPSLHQPWQAATTGLDEALIKTITVCKYRKGDGLVQVPDCSVCLSEFEEDEYIRLLPKCSHAFHLPCIDTWLQSHSSCPLCRANIFCFNTSSIQLPPPVIEIPSRNEVFSERQNENEVFSVRRDHQRADHEEVMHHRVTPKPALRVLSDLGDSHGRDTIIEIRDEVYDSVIRRSISMDHSLQTQSSLSVAEVLQLNHDEDIHVEDQCSIEVGSSKNSVGETSRSRYKRKVLNRVRSPIVMKRSFSGRRFLLSTQGRDEQQAGVSA* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00321 367 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Pte11g00321 367 CDD RING-H2_EL5-like 141 184 - -
Pte11g00321 367 Pfam Ring finger domain 141 184 IPR001841 -
Pte11g00321 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 188 IPR013083 -
Pte11g00321 367 SMART ring_2 142 183 IPR001841 -
Pte11g00321 367 PANTHER RING-H2 FINGER PROTEIN ATL16 41 328 IPR044600 GO:0016567|GO:0016740
Pte11g00321 367 SUPERFAMILY RING/U-box 141 189 - -
Pte11g00321 367 FunFam E3 ubiquitin-protein ligase ATL6 106 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00321 Pte-Chr11 3410432 3411962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00321 1 244 C3H Transcription Factor Family AT3G03550 44.403 6.50e-65 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00321 - - qsa:O6P43_033328 453.366