Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00320 ATGTTGGTAGGAAAAAAGAGTTTGTTTTCACGTGGTTGGTCTGCAGAGCATCTGACAGCTTGGACCATGTCTCCAAATCGAGATTGTGATCAGATATTTGAAACTGAAAGCGATAGAAGATGTCGCTCTTTTGGATCGGAAGACAATAACAATGGAGTTATACTCAATGCGCAGAATGTAAATGGAGTCCAAGGAAGAAGGAAAAGGAGAAGAAGGCCAAGAATTTGCAAGAACAAAGAAGAAGCTGAAACGCAAAGGATGACTCACATTGCAGTAGAAAGAAACCGCCGTAAGCAGATGAATGAACACCTTTCTGTCTTGCGCTCACTCATGCCAGAATCTTACGTCCAGAGGGGTGACCAAGCGTCCACAGTAGGCGGTGCTATAGAATTTGTGAAGGAACTTGAACATGTATTGCAGTCACTTGAAGCTCAAAAGTTTCAACTTATACAACGTACGGCAGAAGCTAATGAAAGCAACGTCGTCTCCAGATTGATGGAACCCCCATTTTCTCAATTTTTTGTGTATCCTCAATACACTTGGTCTCAGATTCCTAACCAATACGCAGCAAAGAGCAAGGCAGCTTTAGCTGACATTGAAGTTACACTGATAGAAACTCATGCAAACCTTCGAATTCTCTCACGGAGAAGCAATAGACAGTTGTCAAAGCTGATAGCTGGTTTTCAACCGCTCTGTATCACCATTCTTCATCTCAATGTAACCACCGTGGAACCATTAGTCCTCTATTCAATCAGTGCCAAGGTTGAGGAAGGAAGCCAATTGACTACAGTAGATGACATTGCAACGGCAGTCCACCACCTACTCAGAATGATTGAGGAGGAAGCCACCCCGTGCTTTTGTTGA 864 0.434 MLVGKKSLFSRGWSAEHLTAWTMSPNRDCDQIFETESDRRCRSFGSEDNNNGVILNAQNVNGVQGRRKRRRRPRICKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASTVGGAIEFVKELEHVLQSLEAQKFQLIQRTAEANESNVVSRLMEPPFSQFFVYPQYTWSQIPNQYAAKSKAALADIEVTLIETHANLRILSRRSNRQLSKLIAGFQPLCITILHLNVTTVEPLVLYSISAKVEEGSQLTTVDDIATAVHHLLRMIEEEATPCFC* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00320 287 PANTHER MAX DIMERIZATION, MAD 60 283 - -
Pte11g00320 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 154 IPR036638 GO:0046983
Pte11g00320 287 Gene3D - 76 152 IPR036638 GO:0046983
Pte11g00320 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 135 IPR011598 GO:0046983
Pte11g00320 287 Pfam Helix-loop-helix DNA-binding domain 85 136 IPR011598 GO:0046983
Pte11g00320 287 Coils Coil 132 152 - -
Pte11g00320 287 CDD bHLH_AtFAMA_like 87 163 - -
Pte11g00320 287 SMART finulus 90 141 IPR011598 GO:0046983
Pte11g00320 287 MobiDBLite consensus disorder prediction 62 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00320 Pte-Chr11 3405438 3408424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00320 76 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 56.906 3.99e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte11g00320 HLH 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00320 - - qsa:O6P43_025148 341.658