Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00316 ATGGGGAGGTCTCCATGTTGCGACGAGCCTGGTTTAAAAAAATGGCCATGGACACCTGAAGAGAACAAAAAACTAATGGATTATATTGGTAAACACGGACATGGAAGTTGGAGAAATCTTCCAAAGCTTGCTGGTCTGAATAGGTGTGGGAAAAGCTGCAGGTTAAGGTGGACAAATTATCTGAGGCCTGATATCAGAAGGGGTAAATTCACTGAAGAAGAAGAGAGAATCATAATCGACCTTCATACAGTTCTAGGAAACAAATGGTCAAGGATTGCAGAGCAGCTTCCAGGACGAACAAACAATGAAATCAAGAATTTCTGGAACACTCATCTTAGAAAAAAACTTCTTCAGATGGGCATTAATCCAGCTACTCACCAGCCAAGAACCGATTTGAACCACCTCATGAATCTTACACAACTGCTTGGACTGTTAAACTTAAGTAACTCAAGGAATCTTCGGGTTAACTCTTTTGCTATGCAAGCAGATATGACTCACGTAGCTCCAGGTATTGCAAAATCTACTGCACACCATAAATACTAG 543 0.4107 MGRSPCCDEPGLKKWPWTPEENKKLMDYIGKHGHGSWRNLPKLAGLNRCGKSCRLRWTNYLRPDIRRGKFTEEEERIIIDLHTVLGNKWSRIAEQLPGRTNNEIKNFWNTHLRKKLLQMGINPATHQPRTDLNHLMNLTQLLGLLNLSNSRNLRVNSFAMQADMTHVAPGIAKSTAHHKY* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00316 180 CDD SANT 69 112 IPR001005 -
Pte11g00316 180 CDD SANT 16 61 IPR001005 -
Pte11g00316 180 SMART sant 13 63 IPR001005 -
Pte11g00316 180 SMART sant 66 114 IPR001005 -
Pte11g00316 180 FunFam MYB-related transcription factor 13 66 - -
Pte11g00316 180 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 149 - -
Pte11g00316 180 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte11g00316 180 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte11g00316 180 Gene3D - 69 116 - -
Pte11g00316 180 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte11g00316 180 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte11g00316 180 Gene3D - 14 66 - -
Pte11g00316 180 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte11g00316 180 Pfam Myb-like DNA-binding domain 16 61 IPR001005 -
Pte11g00316 180 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte11g00316 180 FunFam Transcription factor MYB39 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00316 Pte-Chr11 3391876 3392521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00316 1 168 MYB Transcription Factor Family AT5G16770 71.006 2.83e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte11g00316 Myb_DNA-binding 9.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00316 K09422 - cave:132178921 252.677