Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte11g00309 | ATGAGCTTTCAGGATCTCGAAGCTGGACGCCCTTTCGCTTCGAGGCGAGACCACATCAATGGAAAACAAGACCCTACACAGGCCGTCGCCTCTGGTATTTTTCAGATCAATACAGCCGTCTCTACATTTCAGAGGCTTGTCAATACCCTTGGTACCCCCAAGGACACGCCTGAACTAAGAGAGAAGTTGCACAAGACAAGGCTACATATTGGGCAATTGGTGAAAGATACGTCTGCCAAACTGAAACAAGCTAGTGACATAGATCATCACGCCGGGATCAATGCAAGCAAGAAAATTGCAGATGCTAAACTGGCAAAAGATTTTCAAGCAGTGCTCAAAGAATTTCAGAAGGCTCAACGGCTTGCTGCTGAAAGAGAAACAGCTTACACTCCTTTTATTCCACAAGCAGTCCTACCTTCCAGCTATACAGCCAGTGAGGTAGATGTCTCTTCTGATAGGACTCCAGAACAGCGTGCGCTTCTCGTTGAATCACGAAGACAAGAAGTGTTACTGTTGGACAATGAGATTGCCTTTAATGAAGCTATCATAGAGGAAAGAGAGCAAGGAATTCATGAAATTCAGCAGCAAATTGGTGAAGTGAATGAGATCTTTAAAGATCTTGCTGTCCTTGTTCATGAGCAAGGAGCTATGATTGATGATATTGGCTCCAACATTGAGGGTGCCCATGCAGCCACTGCACAAGGAAAGTCTCAGCTTGTCAAAGCCTCAAAAACCCAGAGATCGAATTCATCACTGAGCTCACATGATTGA | 771 | 0.4501 | MSFQDLEAGRPFASRRDHINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAGINASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFIPQAVLPSSYTASEVDVSSDRTPEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGAHAATAQGKSQLVKASKTQRSNSSLSSHD* | 257 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte11g00309 | 256 | CDD | SNARE_Qa | 183 | 241 | - | - | |
| Pte11g00309 | 256 | Pfam | Syntaxin-like protein | 30 | 129 | IPR006011 | GO:0016020 | |
| Pte11g00309 | 256 | CDD | SynN | 23 | 148 | IPR006011 | GO:0016020 | |
| Pte11g00309 | 256 | MobiDBLite | consensus disorder prediction | 236 | 256 | - | - | |
| Pte11g00309 | 256 | PANTHER | SYNTAXIN | 26 | 250 | IPR045242 | - | |
| Pte11g00309 | 256 | SMART | SynN_4 | 15 | 127 | IPR006011 | GO:0016020 | |
| Pte11g00309 | 256 | ProSitePatterns | Syntaxin / epimorphin family signature. | 186 | 225 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Pte11g00309 | 256 | SMART | tSNARE_6 | 175 | 242 | IPR000727 | - | |
| Pte11g00309 | 256 | Gene3D | - | 18 | 132 | - | - | |
| Pte11g00309 | 256 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 180 | 242 | IPR000727 | - | |
| Pte11g00309 | 256 | SUPERFAMILY | t-snare proteins | 23 | 235 | IPR010989 | GO:0016020|GO:0016192 | |
| Pte11g00309 | 256 | Gene3D | - | 184 | 251 | - | - | |
| Pte11g00309 | 256 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Pte11g00309 | 256 | FunFam | Syntaxin-22 like | 20 | 133 | - | - | |
| Pte11g00309 | 256 | FunFam | Syntaxin-22 like | 173 | 255 | - | - | |
| Pte11g00309 | 256 | Pfam | SNARE domain | 217 | 252 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte11g00309 | Pte-Chr11 | 3358700 | 3361040 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte11g00309 | 1 | 254 | SNARE and Associated Proteins | AT5G46860 | 77.559 | 5.07e-143 | 400 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte11g00309 | - | - | gmx:547656 | 425.631 |