Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00283 ATGGTAAAGCATAACAATGTTGTGCCTAATGGGCACTTCATGAGGAAGCATTGGCAAAACTATGTGAAGACATGGTTCAATCAACCCGCGAGGAAGACGAGGAGACGATTAGCTCGCCAAAAGAAAGCTGTTCGCACCTTCCCCAGGCCAGGTGAACATCTCAGACCTATTGTTCATGGTCAAACTTTGAAGTACAACATGAAAGTTAGGGCTGGTAGGGGATTCTCTCTGGAAGAAATTAAGGCTGCAGGCATCCCTAAGAAATTAGCACCAACCATTGGCATTTCTGTTGATCATAGGCGCAAAAACCGATCTTTGGAAGGTCTGCAAGCTAAGGTACAGAGGCTGAAGACATACAAGGTCAAGTTAGTTGTGTTCCCAAGGCGTCCAAAGAAGTTCAAGGTTACAGATGAGATGAAGTCATTCAATGCCTATGCCAAGCTTCGCCTTGAGCGCACGAACCAGCGTCATGTTGGCCCAGGGAACGTGGAGAGAGACACCACACTTCGAACATCACAAATCCACAGAGTCAGAGAAAGCAAAATGGGTTTGAAGGAGGAGTTTGAGCTGCATGCTCAGAAAATCATGACCTTGCCTCAGGACACAACAAATGAAAACAAGCTTGTCCTTTATGGACTATACAAGCAAGCCACCGTTGGACCAGTTAACACCAGCCGTCCTGGAATGTTCAACATGAGGGACAGAGCTAAATGGGATGCGTGGAAGGCCGTAGAAGGAAAATCCACTGATGAAGCAATGGGAGATTACATTACAAAGGTGAAGCAATTGCTGGAAGAAGCTGGTGTTGCGTGA 813 0.4649 MVKHNNVVPNGHFMRKHWQNYVKTWFNQPARKTRRRLARQKKAVRTFPRPGEHLRPIVHGQTLKYNMKVRAGRGFSLEEIKAAGIPKKLAPTIGISVDHRRKNRSLEGLQAKVQRLKTYKVKLVVFPRRPKKFKVTDEMKSFNAYAKLRLERTNQRHVGPGNVERDTTLRTSQIHRVRESKMGLKEEFELHAQKIMTLPQDTTNENKLVLYGLYKQATVGPVNTSRPGMFNMRDRAKWDAWKAVEGKSTDEAMGDYITKVKQLLEEAGVA* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00283 270 ProSitePatterns Acyl-CoA-binding (ACB) domain signature. 202 220 IPR022408 -
Pte11g00283 270 Pfam Ribosomal protein L13e 8 160 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pte11g00283 270 Pfam Acyl CoA binding protein 186 260 IPR000582 GO:0000062
Pte11g00283 270 FunFam Acyl-CoA-binding domain-containing protein 5 183 270 - -
Pte11g00283 270 Gene3D - 134 160 - -
Pte11g00283 270 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Pte11g00283 270 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 184 269 IPR000582 GO:0000062
Pte11g00283 270 PRINTS Acyl-coA-binding protein signature 225 240 IPR000582 GO:0000062
Pte11g00283 270 PRINTS Acyl-coA-binding protein signature 246 263 IPR000582 GO:0000062
Pte11g00283 270 PRINTS Acyl-coA-binding protein signature 185 200 IPR000582 GO:0000062
Pte11g00283 270 PRINTS Acyl-coA-binding protein signature 202 220 IPR000582 GO:0000062
Pte11g00283 270 PANTHER 60S RIBOSOMAL PROTEIN L13 1 146 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pte11g00283 270 Gene3D - 171 269 IPR014352 -
Pte11g00283 270 SUPERFAMILY Acyl-CoA binding protein 184 266 IPR035984 GO:0000062
Pte11g00283 270 Hamap 50S ribosomal protein L13e [rpl13e]. 46 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pte11g00283 270 CDD ACBP 184 268 IPR000582 GO:0000062
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00283 Pte-Chr11 3059290 3062972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00283 2 159 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 66.146 4.69e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00283 K02873 - aew:130752683 267.7