LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte11g00283	ATGGTAAAGCATAACAATGTTGTGCCTAATGGGCACTTCATGAGGAAGCATTGGCAAAACTATGTGAAGACATGGTTCAATCAACCCGCGAGGAAGACGAGGAGACGATTAGCTCGCCAAAAGAAAGCTGTTCGCACCTTCCCCAGGCCAGGTGAACATCTCAGACCTATTGTTCATGGTCAAACTTTGAAGTACAACATGAAAGTTAGGGCTGGTAGGGGATTCTCTCTGGAAGAAATTAAGGCTGCAGGCATCCCTAAGAAATTAGCACCAACCATTGGCATTTCTGTTGATCATAGGCGCAAAAACCGATCTTTGGAAGGTCTGCAAGCTAAGGTACAGAGGCTGAAGACATACAAGGTCAAGTTAGTTGTGTTCCCAAGGCGTCCAAAGAAGTTCAAGGTTACAGATGAGATGAAGTCATTCAATGCCTATGCCAAGCTTCGCCTTGAGCGCACGAACCAGCGTCATGTTGGCCCAGGGAACGTGGAGAGAGACACCACACTTCGAACATCACAAATCCACAGAGTCAGAGAAAGCAAAATGGGTTTGAAGGAGGAGTTTGAGCTGCATGCTCAGAAAATCATGACCTTGCCTCAGGACACAACAAATGAAAACAAGCTTGTCCTTTATGGACTATACAAGCAAGCCACCGTTGGACCAGTTAACACCAGCCGTCCTGGAATGTTCAACATGAGGGACAGAGCTAAATGGGATGCGTGGAAGGCCGTAGAAGGAAAATCCACTGATGAAGCAATGGGAGATTACATTACAAAGGTGAAGCAATTGCTGGAAGAAGCTGGTGTTGCGTGA	813	0.4649	MVKHNNVVPNGHFMRKHWQNYVKTWFNQPARKTRRRLARQKKAVRTFPRPGEHLRPIVHGQTLKYNMKVRAGRGFSLEEIKAAGIPKKLAPTIGISVDHRRKNRSLEGLQAKVQRLKTYKVKLVVFPRRPKKFKVTDEMKSFNAYAKLRLERTNQRHVGPGNVERDTTLRTSQIHRVRESKMGLKEEFELHAQKIMTLPQDTTNENKLVLYGLYKQATVGPVNTSRPGMFNMRDRAKWDAWKAVEGKSTDEAMGDYITKVKQLLEEAGVA*	271

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte11g00283	270	ProSitePatterns	Acyl-CoA-binding (ACB) domain signature.	202	220	IPR022408	-
	Pte11g00283	270	Pfam	Ribosomal protein L13e	8	160	IPR001380	GO:0003735\|GO:0005840\|GO:0006412
	Pte11g00283	270	Pfam	Acyl CoA binding protein	186	260	IPR000582	GO:0000062
	Pte11g00283	270	FunFam	Acyl-CoA-binding domain-containing protein 5	183	270	-	-
	Pte11g00283	270	Gene3D	-	134	160	-	-
	Pte11g00283	270	ProSitePatterns	Ribosomal protein L13e signature.	70	84	IPR018256	GO:0003735\|GO:0005840\|GO:0006412
	Pte11g00283	270	ProSiteProfiles	Acyl-CoA-binding (ACB) domain profile.	184	269	IPR000582	GO:0000062
	Pte11g00283	270	PRINTS	Acyl-coA-binding protein signature	225	240	IPR000582	GO:0000062
	Pte11g00283	270	PRINTS	Acyl-coA-binding protein signature	246	263	IPR000582	GO:0000062
	Pte11g00283	270	PRINTS	Acyl-coA-binding protein signature	185	200	IPR000582	GO:0000062

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte11g00283	Pte-Chr11	3059290	3062972	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte11g00283	2	159	Cytoplasmic Ribosomal Protein Gene Family	AT3G49010	66.146	4.69e-84	249

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte11g00283	K02873		-	aew:130752683	267.7

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