Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00271 ATGGGATCCAGTGGTAGCAAAGCGTCAACCTCTTGCAGTGCACCGAAGTCTTCGTCATCTTCAGGTAGTTTTAGGAAAGCTCGATCTAAAGGACATAGAAGTTTCCACTCTTATTGTTTGGGAAACACATCTGGATCTCATGACAGTGACAATGAGGATGAGATTTTTGATCATCAAAGATTTGGAAATGATGCACAGACAAATCCTGCAGAAGAAGACTCAAACCAGAGGAAAATTTTGTGTCACGGAAATGTTCAATCAAATAAATCTGATGAAATCCATTGTGTGTCTTCTAATGCTGGACCTAATGAATGGAGTCAAGCAACAATCTCAAATAATGTGACCCGAACTAATAGGGCTTCTGCCTTTGATTCTTCAACAAATTCTTGGAATCCTTCCAGTCGGTTCCTTTCTCGGTTCAGTCTCATTCCCAGTAATATAAGCTTTAGATTAAGAAGAACAACAAGTTTAGGGTCATCAAGGTCTTGTCCTATTTCTTCACCAAGACACACAATGTTAAACAGTGAAGGTGAGGTTCATCTGCATGCAGCAGCTGGAGGCAGCTTTGGTAACATTGATGGAAATGAACAACATAGTCATGTGTATCCTGTATGTTTGGTTAATTCTACTTCCTCACAATGTTTTCCAAACTCTCCTAATCTAAGGTTCAATGCCTTGACATCTGGTTTATCTGATTACTCAATAAATGATCCTGAGAACTCTCATGCCCAAGAGGTGGTCAGAGATAGGCGAGTTAACATTCTGCAGAATGACGTGAACTGTTATTCTCCAAGCGTTCATGCCGAAACAGAGAGTGGAGATACAAGACATTCTGATAGGCGGATTGGGACTCGAGAACCTGTTGAAAGAAATGTCAGATTCAGCCGAACTCTTAGTGTTGGTAGGCTACGTGACAGGGTTCTTCGTAGATCATCATTATCTGACTTCTCATTTTGCCCTCCACAGCATGAAAGAGACATCAGAAATGCCAGTCAAAGTAGAAGACCAGCACAGGAGAGTAACGTTAGTGTGTCACCATCTGATGCCCATGCTGTAAATTCTCCTTCCACAGCTGAATTTAGTTCTGGAGTATCAAGCTCCTTGTTTGGCATTCAAGACTATGAAGTTGAGACTTCACTGTCAAGAGAAGCTAGGTATCAGGATATAATGGAACATAGGTCCAATTTTCTTGAAAGGAGAAGAAGGATACGATCTCAGGTTCGTGCACTTCAACGCTTAGGTAATCGCTTTGAGAACCTGTCTGGACATGACAGGTCATGTATCTTATCAGGTCAACATAGAAGTGGCCGTTGTACATGTCGTCTTAATAATCGTGAGGCTAATGCCAATGATGATAACAGCGCAAGGGCAAGCATCTCAAGGATCGTTGTGCTAGCTGAAGCTCTGTTTGAGGTTCTGGATGAAATTCACCAACAATCTGTGGTTTTGTCCTCCCGTCCTTCTGTATCCTCTATTGGATCTGTTCCTGCTCCTAATGAAGTTGTGGAGTCTTTACCTATCAAATTATATACAAAGTTGCAAAAACATCAAGATGAGGCAGTGCAATGCTACATATGCCTTGTGGAGTATGAGGATGGGGATAGCATGAGAGTACTGCCTTGTCATCATGAATTTCATAGGTCATGTGTAGACAAGTGGCTAAAGGAGATTCACAGGGTATGCCCACTTTGTAGGGGTGACATATGCTCATCTGGTTCATTGCCAGTGGAAAACTAA 1737 0.4191 MGSSGSKASTSCSAPKSSSSSGSFRKARSKGHRSFHSYCLGNTSGSHDSDNEDEIFDHQRFGNDAQTNPAEEDSNQRKILCHGNVQSNKSDEIHCVSSNAGPNEWSQATISNNVTRTNRASAFDSSTNSWNPSSRFLSRFSLIPSNISFRLRRTTSLGSSRSCPISSPRHTMLNSEGEVHLHAAAGGSFGNIDGNEQHSHVYPVCLVNSTSSQCFPNSPNLRFNALTSGLSDYSINDPENSHAQEVVRDRRVNILQNDVNCYSPSVHAETESGDTRHSDRRIGTREPVERNVRFSRTLSVGRLRDRVLRRSSLSDFSFCPPQHERDIRNASQSRRPAQESNVSVSPSDAHAVNSPSTAEFSSGVSSSLFGIQDYEVETSLSREARYQDIMEHRSNFLERRRRIRSQVRALQRLGNRFENLSGHDRSCILSGQHRSGRCTCRLNNREANANDDNSARASISRIVVLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPIKLYTKLQKHQDEAVQCYICLVEYEDGDSMRVLPCHHEFHRSCVDKWLKEIHRVCPLCRGDICSSGSLPVEN* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00271 578 SMART ring_2 523 564 IPR001841 -
Pte11g00271 578 MobiDBLite consensus disorder prediction 333 358 - -
Pte11g00271 578 SUPERFAMILY RING/U-box 501 570 - -
Pte11g00271 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 570 IPR013083 -
Pte11g00271 578 MobiDBLite consensus disorder prediction 270 284 - -
Pte11g00271 578 Pfam Ring finger domain 522 565 IPR001841 -
Pte11g00271 578 ProSiteProfiles Zinc finger RING-type profile. 523 565 IPR001841 -
Pte11g00271 578 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 577 - -
Pte11g00271 578 MobiDBLite consensus disorder prediction 263 284 - -
Pte11g00271 578 MobiDBLite consensus disorder prediction 1 28 - -
Pte11g00271 578 MobiDBLite consensus disorder prediction 1 25 - -
Pte11g00271 578 MobiDBLite consensus disorder prediction 319 358 - -
Pte11g00271 578 FunFam Putative RING zinc finger domain superfamily protein 492 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00271 Pte-Chr11 2909678 2914615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00271 215 569 C3H Transcription Factor Family AT5G45290 58.065 2.38e-117 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00271 - - qsa:O6P43_033446 652.899