LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte11g00261	ATGACTGCGGGTTTCAGCGGCGATGAAACTGCTCCTTTCTTTGGCTTCCTCGGAGCAGCGGCTGCCCTTGTTTTCTCATGTATGGGAGCGGCATATGGTACAGCAAAGAGCGGTGTTGGAGTGGCCTCGATGGGTGTGATGAGACCTGAGCTTGTGATGAAATCTATCGTACCAGTTGTTATGGCTGGTGTGTTGGGTATTTATGGCTTAATCATTGCTGTCATTATCAGTACGGGTATAAACCCTAAGGCCAAATCTTACTATTTATTTGATGGCTACGCTCACCTTTCCTCTGGTCTCGCTTGTGGCCTTGCTGGACTTTCTGCTGGAATGGCCATTGGTATTGTAGGTGATGCTGGTGTTAGGGCTAATGCGCAGCAGCCAAAGCTTTTTGTGGGTATGATTCTCATTCTCATCTTTGCTGAAGCTTTGGCTCTGTATGGTCTCATTGTCGGCATCATCCTCTCATCTCGTGCTGGCCAATCCAGAGCTGATTAA	498	0.4819	MTAGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD*	166

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte11g00261	165	CDD	ATP-synt_Vo_c_ATP6C_rpt1	13	80	-	-
	Pte11g00261	165	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	134	157	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Pte11g00261	165	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	107	133	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Pte11g00261	165	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	56	80	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Pte11g00261	165	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	30	54	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Pte11g00261	165	PANTHER	V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT	4	161	-	-
	Pte11g00261	165	FunFam	V-type proton ATPase proteolipid subunit	11	162	-	-
	Pte11g00261	165	CDD	ATP-synt_Vo_c_ATP6C_rpt2	89	156	-	-
	Pte11g00261	165	Gene3D	-	11	162	IPR035921	-
	Pte11g00261	165	Pfam	ATP synthase subunit C	97	155	IPR002379	GO:0015078\|GO:0033177\|GO:1902600

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte11g00261	Pte-Chr11	2804131	2806280	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte11g00261	5	166	Primary Pumps ATPases(2)	AT2G16510	99.383	2.50e-110	309

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte11g00261	K02155		-	thj:104806903	288.5

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