Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte11g00258 | ATGTTAAATTTGTCAAAAAATAATATCTCCACCATTGAAGGGTTACGTGAACTTTCCCGACTTCGTGTATTAGACCTGAGCTATAATCGTATTCTCAGAATTGGTCATGGGTTGGCTTCTTGTTCATCTCTGAAGGAGCTGTACTTGGCCGAAAACAAGATAAGTGAAATAGAGGGCCTTCACCGACTATTAAAACTTAATATTCTGGATCTACGTTTCAACAAAATCTCAACTGCCAAATGTCTTGACCAGCTAGCAGCTAATTATGTTTCCTTGCAAGCCATCAGCAAGTACACACAAGTACAAGGAGCAGAGAGTGGAGGGAGGCGTAATGAAGGGGTGCGAAATGGAGGGGTTAGCAAAACCATAACGCAAGGTTGCTCTGGTCTCATTCGTCGTTCTTCAAACTTCAATACCTGGCGCATCAATCACATCTACATTGATCCCCACAATGCTCACAAGGCCCGTATCAAGCTTCACTATGCCGATCTCACGGATGCTTCTTCCCTGCGTCGCAGGCTCGATTCCATTCTCCCAGATGAGGCTATTAGAAGCGGTCCGGTCACACATCGCTGCAACGGGTCGGAGCCACATCTGGTATTACCAAGCTGGATCGTCGGAAATGTACGGGTCAACTCCTCCACCTCAATCGGAGACTACCCCGTTCCATTGCGCATTGAGAAAACTATCCAAGAAACACAAGATCGTGCAAAAGAAAATCAAAAGGAAAATGACTCAGGAAACACATCCTGTACGAGAAAAAAGAACCAAGATTACCGACAACTTAAACAGATATCGACACACACGTTGGACAGTAATAAACGGTTAGATTGTTCCCACGTGCAGGCAGACCAAGCTATGCCGTCTGATGCAGAAGTGGATGCTCCGGTTGTTGAGCAACCATCGGCAGATCCCATCTTAGCGCCGGAAGAGCCTAAACCGGAGAAGAAGAATGGGAAGAACACCCGAGCTGCCAGGGAGAAGAAGCCTAAACAATCAAAATCTGGTTCTCATCCTCCCTATTTTCAGATGATTCAGGAGGCTTTGTTAACTCTGAACGAGAAGAGCGGTTCCAGTCCGTACGCTATAGCCAAGTACATGGAGGAGAAGCATAAGGGTGTGTTACCAGCGAATTTCAAGAAGATTTTGGCTCTGCAATTGAAGAACTCTGCAGCCAAAGGAAAGCTGATCAAAGTCAGGGCTTCCTACAAACTTTCTGATGCAGGCAAGAAGGAAAAAGGTACTGCTGCCAAAGTGGGCAAGAAGGCTACAGATACTGCGAAGAAACAGCAGCCAAAAAATAAGAAGAAACCCGTGACTAAGAAAGTGTCAGCTCTCAAGGCTAAGGCGGAAAAGAAGCCCGAGACAGCGAAGGCAAAGAAAGGTGGGGCCAAGAAGATTAGGAAATCAACCCCTGCGAAGCCTAAGCAGCCAAAGTCTATTAAGTCTCCTGCAGCTAAGAGATCCAGAAAAGCTACTGTGTGA | 1485 | 0.462 | MLNLSKNNISTIEGLRELSRLRVLDLSYNRILRIGHGLASCSSLKELYLAENKISEIEGLHRLLKLNILDLRFNKISTAKCLDQLAANYVSLQAISKYTQVQGAESGGRRNEGVRNGGVSKTITQGCSGLIRRSSNFNTWRINHIYIDPHNAHKARIKLHYADLTDASSLRRRLDSILPDEAIRSGPVTHRCNGSEPHLVLPSWIVGNVRVNSSTSIGDYPVPLRIEKTIQETQDRAKENQKENDSGNTSCTRKKNQDYRQLKQISTHTLDSNKRLDCSHVQADQAMPSDAEVDAPVVEQPSADPILAPEEPKPEKKNGKNTRAAREKKPKQSKSGSHPPYFQMIQEALLTLNEKSGSSPYAIAKYMEEKHKGVLPANFKKILALQLKNSAAKGKLIKVRASYKLSDAGKKEKGTAAKVGKKATDTAKKQQPKNKKKPVTKKVSALKAKAEKKPETAKAKKGGAKKIRKSTPAKPKQPKSIKSPAAKRSRKATV* | 495 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte11g00258 | 494 | Gene3D | - | 125 | 190 | - | - | |
| Pte11g00258 | 494 | MobiDBLite | consensus disorder prediction | 309 | 334 | - | - | |
| Pte11g00258 | 494 | PANTHER | NISCHARIN RELATED | 1 | 95 | - | - | |
| Pte11g00258 | 494 | MobiDBLite | consensus disorder prediction | 444 | 461 | - | - | |
| Pte11g00258 | 494 | MobiDBLite | consensus disorder prediction | 405 | 494 | - | - | |
| Pte11g00258 | 494 | MobiDBLite | consensus disorder prediction | 462 | 494 | - | - | |
| Pte11g00258 | 494 | SUPERFAMILY | Outer arm dynein light chain 1 | 2 | 82 | - | - | |
| Pte11g00258 | 494 | Gene3D | Ribonuclease Inhibitor | 1 | 102 | IPR032675 | - | |
| Pte11g00258 | 494 | ProSiteProfiles | Leucine-rich repeat profile. | 20 | 42 | IPR001611 | GO:0005515 | |
| Pte11g00258 | 494 | SUPERFAMILY | "Winged helix" DNA-binding domain | 335 | 418 | IPR036390 | - | |
| Pte11g00258 | 494 | Pfam | GDP-mannose 4,6 dehydratase | 127 | 182 | IPR016040 | - | |
| Pte11g00258 | 494 | MobiDBLite | consensus disorder prediction | 233 | 260 | - | - | |
| Pte11g00258 | 494 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 337 | 407 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Pte11g00258 | 494 | SMART | LRR_sd22_2 | 63 | 87 | - | - | |
| Pte11g00258 | 494 | SMART | LRR_sd22_2 | 41 | 62 | - | - | |
| Pte11g00258 | 494 | SMART | LRR_sd22_2 | 18 | 40 | - | - | |
| Pte11g00258 | 494 | SMART | h15plus2 | 335 | 402 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Pte11g00258 | 494 | Gene3D | - | 331 | 417 | IPR036388 | - | |
| Pte11g00258 | 494 | Pfam | linker histone H1 and H5 family | 338 | 402 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Pte11g00258 | 494 | ProSiteProfiles | Leucine-rich repeat profile. | 1 | 19 | IPR001611 | GO:0005515 | |
| Pte11g00258 | 494 | Pfam | Leucine rich repeat | 19 | 76 | IPR001611 | GO:0005515 | |
| Pte11g00258 | 494 | MobiDBLite | consensus disorder prediction | 405 | 432 | - | - | |
| Pte11g00258 | 494 | PRINTS | Histone H5 signature | 473 | 492 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Pte11g00258 | 494 | PRINTS | Histone H5 signature | 421 | 435 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Pte11g00258 | 494 | PRINTS | Histone H5 signature | 451 | 468 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Pte11g00258 | 494 | PRINTS | Histone H5 signature | 351 | 368 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Pte11g00258 | 494 | PRINTS | Histone H5 signature | 324 | 345 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Pte11g00258 | 494 | ProSiteProfiles | Leucine-rich repeat profile. | 43 | 64 | IPR001611 | GO:0005515 | |
| Pte11g00258 | 494 | MobiDBLite | consensus disorder prediction | 303 | 342 | - | - | |
| Pte11g00258 | 494 | CDD | H15 | 337 | 418 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Pte11g00258 | 494 | FunFam | Protein phosphatase 1 regulatory subunit pprA | 1 | 110 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte11g00258 | Pte-Chr11 | 2776672 | 2780871 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte11g00258 | 339 | 407 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 37.681 | 1.32e-06 | 48.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte11g00258 | K11275 | - | rcu:8258337 | 201.445 |