Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00247 ATGGCTGACGAGGCGAAGAGGTCTACCGGTGTAGTTGTGCGGTTCAACGACGGCAAGGGTTTTGGCTTCATAAAACCTGATGATGGCAGTGAAGATCTAGTCGTTCATCAATCTTCCATTGTATCTGAAAGCTTTCGCAGTTTATACGCCGGCGATCGTGTGGAGTTTTTAATCACTGTCGGTGAGAACCAGAAGACGAAAGCTGTTGATGTCACTGGTCCCAACAGGACTCCTCTTCAATCTTTCAAGAGAGACAATCATGATGGCAATGGTAACAATGCTAGTAGTGGTCGGTGTTTTTATTGCGGTGGGACTGGACACAGTGCAAGAAACTGTACTCGTGTTAATAGTGGCGGCGGAAATGGTGGTTCTTGCTACAATTGCTGTGAGCATGGCCACCTTGCAAGAGACTGTAATGTTGCAAAAGGCGGTGATGGGCCACTTTGTTATAGATGTAGACAATCGGGTCATTTGGCTAAGGATTGTAATCAAGAAAGCCGAAGATTTGGTGCCGGTGCCGGTGCCGGTGAAGGAGGGAACATTTACTTTCGTTGTGGGGATGTTGGTCATTTTGCAAGGGAGTGTCCTAATTACGCTTAA 600 0.47 MADEAKRSTGVVVRFNDGKGFGFIKPDDGSEDLVVHQSSIVSESFRSLYAGDRVEFLITVGENQKTKAVDVTGPNRTPLQSFKRDNHDGNGNNASSGRCFYCGGTGHSARNCTRVNSGGGNGGSCYNCCEHGHLARDCNVAKGGDGPLCYRCRQSGHLAKDCNQESRRFGAGAGAGEGGNIYFRCGDVGHFARECPNYA* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00247 199 CDD CSP_CDS 9 73 IPR002059 GO:0003676
Pte11g00247 199 MobiDBLite consensus disorder prediction 69 90 - -
Pte11g00247 199 ProSiteProfiles Zinc finger CCHC-type profile. 125 138 IPR001878 GO:0003676|GO:0008270
Pte11g00247 199 SUPERFAMILY Nucleic acid-binding proteins 4 75 IPR012340 -
Pte11g00247 199 PRINTS Cold shock protein signature 10 25 IPR002059 GO:0003676
Pte11g00247 199 PRINTS Cold shock protein signature 31 40 IPR002059 GO:0003676
Pte11g00247 199 PRINTS Cold shock protein signature 46 64 IPR002059 GO:0003676
Pte11g00247 199 SMART csp_8 9 74 IPR011129 GO:0003676
Pte11g00247 199 Gene3D - 94 143 - -
Pte11g00247 199 ProSiteProfiles Cold-shock (CSD) domain profile. 7 73 IPR002059 GO:0003676
Pte11g00247 199 Pfam Zinc knuckle 98 113 IPR001878 GO:0003676|GO:0008270
Pte11g00247 199 Pfam Zinc knuckle 149 163 IPR001878 GO:0003676|GO:0008270
Pte11g00247 199 Pfam Zinc knuckle 183 197 IPR001878 GO:0003676|GO:0008270
Pte11g00247 199 Pfam Zinc knuckle 124 138 IPR001878 GO:0003676|GO:0008270
Pte11g00247 199 ProSiteProfiles Zinc finger CCHC-type profile. 98 114 IPR001878 GO:0003676|GO:0008270
Pte11g00247 199 Gene3D - 144 199 - -
Pte11g00247 199 SUPERFAMILY Retrovirus zinc finger-like domains 90 140 IPR036875 GO:0003676|GO:0008270
Pte11g00247 199 Pfam 'Cold-shock' DNA-binding domain 9 73 IPR002059 GO:0003676
Pte11g00247 199 PANTHER COLD SHOCK DOMAIN PROTEIN 2 142 198 - -
Pte11g00247 199 ProSiteProfiles Zinc finger CCHC-type profile. 183 197 IPR001878 GO:0003676|GO:0008270
Pte11g00247 199 Gene3D - 2 86 IPR012340 -
Pte11g00247 199 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Pte11g00247 199 SUPERFAMILY Retrovirus zinc finger-like domains 142 197 IPR036875 GO:0003676|GO:0008270
Pte11g00247 199 SMART c2hcfinal6 183 197 IPR001878 GO:0003676|GO:0008270
Pte11g00247 199 SMART c2hcfinal6 124 140 IPR001878 GO:0003676|GO:0008270
Pte11g00247 199 SMART c2hcfinal6 98 114 IPR001878 GO:0003676|GO:0008270
Pte11g00247 199 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00247 Pte-Chr11 2696374 2697268 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pte11g00247 CSD 7.3e-20 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00247 K09250 - vvi:100259081 198.749